Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
LINC00643Q86TS7 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC12.71□□□□□ -0.37
LINC00643Q86TS7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC12.71□□□□□ -0.38
LINC00643Q86TS7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00643Q86TS7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00643Q86TS7 POLI-202ENST00000406285 2030 ntTSL 2 BASIC12.71□□□□□ -0.38
LINC00643Q86TS7 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00643Q86TS7 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00643Q86TS7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LINC00643Q86TS7 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 AC124067.4-201ENST00000519691 2379 ntBASIC12.7□□□□□ -0.38
LINC00643Q86TS7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 MKRN4P-201ENST00000444706 1521 ntBASIC12.7□□□□□ -0.38
LINC00643Q86TS7 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
LINC00643Q86TS7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 MIR219A2-201ENST00000608502 1504 ntBASIC12.69□□□□□ -0.38
LINC00643Q86TS7 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 AC068880.1-201ENST00000507289 2297 ntBASIC12.69□□□□□ -0.38
LINC00643Q86TS7 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms