Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.41■□□□□ 0.38
USF3Q68DE3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
USF3Q68DE3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.41■□□□□ 0.38
USF3Q68DE3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.41■□□□□ 0.38
USF3Q68DE3 AC073912.3-201ENST00000624414 853 ntBASIC17.41■□□□□ 0.38
USF3Q68DE3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.41■□□□□ 0.38
USF3Q68DE3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.41■□□□□ 0.38
USF3Q68DE3 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF3Q68DE3 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.4■□□□□ 0.38
USF3Q68DE3 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.4■□□□□ 0.38
USF3Q68DE3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.4■□□□□ 0.38
USF3Q68DE3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.4■□□□□ 0.38
USF3Q68DE3 AC211429.1-201ENST00000415277 523 ntBASIC17.4■□□□□ 0.38
USF3Q68DE3 SNORA78-201ENST00000459373 127 ntBASIC17.4■□□□□ 0.38
USF3Q68DE3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.4■□□□□ 0.38
USF3Q68DE3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.4■□□□□ 0.38
USF3Q68DE3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.4■□□□□ 0.38
USF3Q68DE3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USF3Q68DE3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USF3Q68DE3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USF3Q68DE3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.39■□□□□ 0.38
USF3Q68DE3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
USF3Q68DE3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.39■□□□□ 0.37
USF3Q68DE3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.39■□□□□ 0.37
USF3Q68DE3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.39■□□□□ 0.37
USF3Q68DE3 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.39■□□□□ 0.37
USF3Q68DE3 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
USF3Q68DE3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.39■□□□□ 0.37
USF3Q68DE3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
USF3Q68DE3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.39■□□□□ 0.37
USF3Q68DE3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.39■□□□□ 0.37
USF3Q68DE3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
USF3Q68DE3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
USF3Q68DE3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
USF3Q68DE3 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
USF3Q68DE3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.39■□□□□ 0.37
USF3Q68DE3 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF3Q68DE3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 AC116050.2-201ENST00000612102 1779 ntBASIC17.38■□□□□ 0.37
USF3Q68DE3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 AC087633.2-202ENST00000565166 1439 ntBASIC17.38■□□□□ 0.37
USF3Q68DE3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.38■□□□□ 0.37
USF3Q68DE3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.38■□□□□ 0.37
USF3Q68DE3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.38■□□□□ 0.37
USF3Q68DE3 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.38■□□□□ 0.37
USF3Q68DE3 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.38■□□□□ 0.37
USF3Q68DE3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.38■□□□□ 0.37
USF3Q68DE3 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.38■□□□□ 0.37
USF3Q68DE3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
USF3Q68DE3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
USF3Q68DE3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF3Q68DE3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.37■□□□□ 0.37
USF3Q68DE3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.37■□□□□ 0.37
USF3Q68DE3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.37■□□□□ 0.37
USF3Q68DE3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms