Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
COL4A5P29400 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A5P29400 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A5P29400 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A5P29400 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC24.58■■□□□ 1.53
COL4A5P29400 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
COL4A5P29400 SLC25A3P1-201ENST00000443844 931 ntBASIC24.58■■□□□ 1.53
COL4A5P29400 CFL2-205ENST00000555765 632 ntTSL 2 BASIC24.58■■□□□ 1.53
COL4A5P29400 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC24.58■■□□□ 1.53
COL4A5P29400 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.58■■□□□ 1.53
COL4A5P29400 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC24.58■■□□□ 1.53
COL4A5P29400 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC24.58■■□□□ 1.53
COL4A5P29400 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC24.58■■□□□ 1.53
COL4A5P29400 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.58■■□□□ 1.52
COL4A5P29400 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC24.58■■□□□ 1.52
COL4A5P29400 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
COL4A5P29400 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A5P29400 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.57■■□□□ 1.52
COL4A5P29400 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A5P29400 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A5P29400 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC24.57■■□□□ 1.52
COL4A5P29400 CRAT-202ENST00000393384 973 ntTSL 2 BASIC24.57■■□□□ 1.52
COL4A5P29400 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC24.57■■□□□ 1.52
COL4A5P29400 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC24.57■■□□□ 1.52
COL4A5P29400 AL121906.2-201ENST00000621597 723 ntBASIC24.57■■□□□ 1.52
COL4A5P29400 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A5P29400 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A5P29400 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.57■■□□□ 1.52
COL4A5P29400 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
COL4A5P29400 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A5P29400 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC24.56■■□□□ 1.52
COL4A5P29400 AC023632.3-201ENST00000521633 145 ntBASIC24.56■■□□□ 1.52
COL4A5P29400 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC24.56■■□□□ 1.52
COL4A5P29400 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC24.56■■□□□ 1.52
COL4A5P29400 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC24.56■■□□□ 1.52
COL4A5P29400 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
COL4A5P29400 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
COL4A5P29400 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC24.56■■□□□ 1.52
COL4A5P29400 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A5P29400 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC24.56■■□□□ 1.52
COL4A5P29400 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A5P29400 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC24.56■■□□□ 1.52
COL4A5P29400 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC24.56■■□□□ 1.52
COL4A5P29400 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A5P29400 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A5P29400 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC24.56■■□□□ 1.52
COL4A5P29400 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A5P29400 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
COL4A5P29400 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC24.56■■□□□ 1.52
COL4A5P29400 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC24.56■■□□□ 1.52
COL4A5P29400 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.56■■□□□ 1.52
COL4A5P29400 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
COL4A5P29400 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
COL4A5P29400 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC24.55■■□□□ 1.52
COL4A5P29400 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
COL4A5P29400 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
COL4A5P29400 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
COL4A5P29400 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC24.55■■□□□ 1.52
COL4A5P29400 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
COL4A5P29400 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC24.55■■□□□ 1.52
COL4A5P29400 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC24.55■■□□□ 1.52
COL4A5P29400 DUX4L26-201ENST00000489078 1255 ntBASIC24.55■■□□□ 1.52
COL4A5P29400 AC116562.2-201ENST00000507042 360 ntBASIC24.55■■□□□ 1.52
COL4A5P29400 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC24.55■■□□□ 1.52
COL4A5P29400 PNN-205ENST00000556530 601 ntTSL 2 BASIC24.55■■□□□ 1.52
COL4A5P29400 RMI2-205ENST00000576027 818 ntTSL 2 BASIC24.55■■□□□ 1.52
COL4A5P29400 PALM-207ENST00000590161 2137 ntTSL 4 BASIC24.55■■□□□ 1.52
COL4A5P29400 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
COL4A5P29400 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
COL4A5P29400 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL4A5P29400 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL4A5P29400 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL4A5P29400 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL4A5P29400 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC24.54■■□□□ 1.52
COL4A5P29400 FITM1-202ENST00000559294 800 ntBASIC24.54■■□□□ 1.52
COL4A5P29400 NTF6B-201ENST00000591913 560 ntBASIC24.54■■□□□ 1.52
COL4A5P29400 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
COL4A5P29400 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC24.54■■□□□ 1.52
COL4A5P29400 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL4A5P29400 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC24.54■■□□□ 1.52
COL4A5P29400 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC24.54■■□□□ 1.52
COL4A5P29400 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
COL4A5P29400 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC24.53■■□□□ 1.52
COL4A5P29400 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC24.53■■□□□ 1.52
COL4A5P29400 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC24.53■■□□□ 1.52
COL4A5P29400 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC24.53■■□□□ 1.52
COL4A5P29400 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
COL4A5P29400 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC24.53■■□□□ 1.52
COL4A5P29400 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
COL4A5P29400 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
COL4A5P29400 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC24.53■■□□□ 1.52
COL4A5P29400 TERT-206ENST00000508104 2486 ntTSL 5 BASIC24.53■■□□□ 1.52
COL4A5P29400 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC24.53■■□□□ 1.52
COL4A5P29400 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC24.53■■□□□ 1.52
COL4A5P29400 AC006011.2-201ENST00000621313 1158 ntBASIC24.53■■□□□ 1.52
COL4A5P29400 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL4A5P29400 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
COL4A5P29400 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL4A5P29400 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL4A5P29400 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms