Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HLA-DMBP28068 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DMBP28068 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DMBP28068 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC15.41■□□□□ 0.06
HLA-DMBP28068 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC15.41■□□□□ 0.06
HLA-DMBP28068 FGF8-207ENST00000618991 856 ntTSL 3 BASIC15.41■□□□□ 0.06
HLA-DMBP28068 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HLA-DMBP28068 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
HLA-DMBP28068 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DMBP28068 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DMBP28068 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DMBP28068 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DMBP28068 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
HLA-DMBP28068 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DMBP28068 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
HLA-DMBP28068 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DMBP28068 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC15.39■□□□□ 0.05
HLA-DMBP28068 AC007952.6-201ENST00000573168 2673 ntBASIC15.39■□□□□ 0.05
HLA-DMBP28068 AC003957.1-201ENST00000625108 2673 ntBASIC15.39■□□□□ 0.05
HLA-DMBP28068 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 TCF3P1-201ENST00000423021 1937 ntBASIC15.38■□□□□ 0.05
HLA-DMBP28068 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HLA-DMBP28068 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DMBP28068 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms