Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
COL8A1P27658 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL8A1P27658 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL8A1P27658 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.74■□□□□ 0.43
COL8A1P27658 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.74■□□□□ 0.43
COL8A1P27658 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.74■□□□□ 0.43
COL8A1P27658 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.74■□□□□ 0.43
COL8A1P27658 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.74■□□□□ 0.43
COL8A1P27658 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL8A1P27658 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.74■□□□□ 0.43
COL8A1P27658 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL8A1P27658 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL8A1P27658 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL8A1P27658 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL8A1P27658 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 CRYGFP-201ENST00000418459 633 ntBASIC17.73■□□□□ 0.43
COL8A1P27658 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 AL353807.1-201ENST00000427475 662 ntBASIC17.73■□□□□ 0.43
COL8A1P27658 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL8A1P27658 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL8A1P27658 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.73■□□□□ 0.43
COL8A1P27658 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.73■□□□□ 0.43
COL8A1P27658 AC139530.1-201ENST00000575312 1977 ntBASIC17.73■□□□□ 0.43
COL8A1P27658 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.73■□□□□ 0.43
COL8A1P27658 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.72■□□□□ 0.43
COL8A1P27658 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.72■□□□□ 0.43
COL8A1P27658 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL8A1P27658 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
COL8A1P27658 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.72■□□□□ 0.43
COL8A1P27658 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.72■□□□□ 0.43
COL8A1P27658 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL8A1P27658 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL8A1P27658 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL8A1P27658 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
COL8A1P27658 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL8A1P27658 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL8A1P27658 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL8A1P27658 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL8A1P27658 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL8A1P27658 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL8A1P27658 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL8A1P27658 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL8A1P27658 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL8A1P27658 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
COL8A1P27658 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL8A1P27658 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL8A1P27658 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.71■□□□□ 0.43
COL8A1P27658 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
COL8A1P27658 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.71■□□□□ 0.43
COL8A1P27658 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL8A1P27658 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL8A1P27658 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.71■□□□□ 0.43
COL8A1P27658 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
COL8A1P27658 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL8A1P27658 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.71■□□□□ 0.43
COL8A1P27658 LIN28AP1-201ENST00000429574 405 ntBASIC17.71■□□□□ 0.43
COL8A1P27658 ATP5G1P1-201ENST00000448724 379 ntBASIC17.71■□□□□ 0.43
COL8A1P27658 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.71■□□□□ 0.43
COL8A1P27658 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.71■□□□□ 0.43
COL8A1P27658 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL8A1P27658 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL8A1P27658 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.71■□□□□ 0.43
COL8A1P27658 AC091076.1-201ENST00000610741 619 ntBASIC17.71■□□□□ 0.43
COL8A1P27658 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.71■□□□□ 0.43
COL8A1P27658 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.71■□□□□ 0.43
COL8A1P27658 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.71■□□□□ 0.43
COL8A1P27658 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL8A1P27658 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.71■□□□□ 0.43
COL8A1P27658 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.71■□□□□ 0.43
COL8A1P27658 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.71■□□□□ 0.42
COL8A1P27658 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL8A1P27658 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL8A1P27658 NBPF21P-201ENST00000425093 1451 ntBASIC17.7■□□□□ 0.42
COL8A1P27658 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 KRT18P48-201ENST00000434763 852 ntBASIC17.7■□□□□ 0.42
COL8A1P27658 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.7■□□□□ 0.42
COL8A1P27658 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.7■□□□□ 0.42
COL8A1P27658 FITM1-202ENST00000559294 800 ntBASIC17.7■□□□□ 0.42
COL8A1P27658 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.7■□□□□ 0.42
COL8A1P27658 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL8A1P27658 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.7■□□□□ 0.42
COL8A1P27658 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL8A1P27658 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC17.7■□□□□ 0.42
COL8A1P27658 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms