Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A1P20908 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A1P20908 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.61■□□□□ 0.73
COL5A1P20908 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.61■□□□□ 0.73
COL5A1P20908 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.61■□□□□ 0.73
COL5A1P20908 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL5A1P20908 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A1P20908 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A1P20908 TMPOP1-202ENST00000424642 1267 ntBASIC19.61■□□□□ 0.73
COL5A1P20908 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A1P20908 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.61■□□□□ 0.73
COL5A1P20908 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
COL5A1P20908 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A1P20908 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A1P20908 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL5A1P20908 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 AC023632.3-201ENST00000521633 145 ntBASIC19.6■□□□□ 0.73
COL5A1P20908 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.6■□□□□ 0.73
COL5A1P20908 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.6■□□□□ 0.73
COL5A1P20908 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.6■□□□□ 0.73
COL5A1P20908 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.6■□□□□ 0.73
COL5A1P20908 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL5A1P20908 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.6■□□□□ 0.73
COL5A1P20908 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL5A1P20908 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.6■□□□□ 0.73
COL5A1P20908 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.6■□□□□ 0.73
COL5A1P20908 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL5A1P20908 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL5A1P20908 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
COL5A1P20908 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.6■□□□□ 0.73
COL5A1P20908 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.6■□□□□ 0.73
COL5A1P20908 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.59■□□□□ 0.73
COL5A1P20908 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A1P20908 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A1P20908 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.59■□□□□ 0.73
COL5A1P20908 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A1P20908 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.59■□□□□ 0.73
COL5A1P20908 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.59■□□□□ 0.73
COL5A1P20908 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A1P20908 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.59■□□□□ 0.73
COL5A1P20908 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
COL5A1P20908 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A1P20908 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A1P20908 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.58■□□□□ 0.73
COL5A1P20908 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.58■□□□□ 0.73
COL5A1P20908 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
COL5A1P20908 MIR6786-201ENST00000616843 113 ntBASIC19.58■□□□□ 0.73
COL5A1P20908 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL5A1P20908 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL5A1P20908 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
COL5A1P20908 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A1P20908 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A1P20908 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A1P20908 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
COL5A1P20908 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
COL5A1P20908 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
COL5A1P20908 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.58■□□□□ 0.72
COL5A1P20908 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.58■□□□□ 0.72
COL5A1P20908 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL5A1P20908 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL5A1P20908 AC092865.7-201ENST00000641832 219 ntBASIC19.58■□□□□ 0.72
COL5A1P20908 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A1P20908 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A1P20908 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 AC244015.2-201ENST00000616358 1861 ntBASIC19.57■□□□□ 0.72
COL5A1P20908 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.57■□□□□ 0.72
COL5A1P20908 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A1P20908 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A1P20908 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.57■□□□□ 0.72
COL5A1P20908 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A1P20908 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.57■□□□□ 0.72
COL5A1P20908 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A1P20908 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 NBPF21P-201ENST00000425093 1451 ntBASIC19.57■□□□□ 0.72
COL5A1P20908 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A1P20908 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A1P20908 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.57■□□□□ 0.72
COL5A1P20908 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.56■□□□□ 0.72
COL5A1P20908 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.56■□□□□ 0.72
COL5A1P20908 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms