Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.95■■□□□ 1.42
HMGB1P09429 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
HMGB1P09429 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
HMGB1P09429 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
HMGB1P09429 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB1P09429 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.94■■□□□ 1.42
HMGB1P09429 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
HMGB1P09429 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB1P09429 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.94■■□□□ 1.42
HMGB1P09429 AC010980.2-201ENST00000587099 1412 ntBASIC23.94■■□□□ 1.42
HMGB1P09429 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB1P09429 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC23.94■■□□□ 1.42
HMGB1P09429 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB1P09429 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB1P09429 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB1P09429 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB1P09429 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
HMGB1P09429 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.94■■□□□ 1.42
HMGB1P09429 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.94■■□□□ 1.42
HMGB1P09429 AC105020.6-201ENST00000621523 1217 ntBASIC23.94■■□□□ 1.42
HMGB1P09429 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC23.94■■□□□ 1.42
HMGB1P09429 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.94■■□□□ 1.42
HMGB1P09429 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.94■■□□□ 1.42
HMGB1P09429 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.94■■□□□ 1.42
HMGB1P09429 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
HMGB1P09429 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC23.94■■□□□ 1.42
HMGB1P09429 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 DPP3P2-201ENST00000416030 1696 ntBASIC23.93■■□□□ 1.42
HMGB1P09429 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.93■■□□□ 1.42
HMGB1P09429 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.93■■□□□ 1.42
HMGB1P09429 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.93■■□□□ 1.42
HMGB1P09429 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.93■■□□□ 1.42
HMGB1P09429 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HMGB1P09429 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.93■■□□□ 1.42
HMGB1P09429 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.92■■□□□ 1.42
HMGB1P09429 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGB1P09429 SMG8-203ENST00000578922 2178 ntBASIC23.92■■□□□ 1.42
HMGB1P09429 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
HMGB1P09429 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGB1P09429 AC026185.1-201ENST00000445748 174 ntBASIC23.92■■□□□ 1.42
HMGB1P09429 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.92■■□□□ 1.42
HMGB1P09429 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGB1P09429 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.92■■□□□ 1.42
HMGB1P09429 STK25-205ENST00000405883 1904 ntTSL 2 BASIC23.92■■□□□ 1.42
HMGB1P09429 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HMGB1P09429 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC23.92■■□□□ 1.42
HMGB1P09429 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC23.92■■□□□ 1.42
HMGB1P09429 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
HMGB1P09429 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.91■■□□□ 1.42
HMGB1P09429 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.91■■□□□ 1.42
HMGB1P09429 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 AC099778.1-201ENST00000568593 1911 ntBASIC23.91■■□□□ 1.42
HMGB1P09429 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.91■■□□□ 1.42
HMGB1P09429 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.91■■□□□ 1.42
HMGB1P09429 RAP2CP1-201ENST00000605103 478 ntBASIC23.91■■□□□ 1.42
HMGB1P09429 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.91■■□□□ 1.42
HMGB1P09429 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HMGB1P09429 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.9■■□□□ 1.42
HMGB1P09429 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.9■■□□□ 1.42
HMGB1P09429 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.9■■□□□ 1.42
HMGB1P09429 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.9■■□□□ 1.42
HMGB1P09429 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
HMGB1P09429 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
HMGB1P09429 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.9■■□□□ 1.42
HMGB1P09429 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.9■■□□□ 1.42
HMGB1P09429 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.9■■□□□ 1.42
HMGB1P09429 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC23.9■■□□□ 1.42
HMGB1P09429 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HMGB1P09429 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.9■■□□□ 1.42
HMGB1P09429 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
HMGB1P09429 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms