Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.39■□□□□ 0.7
SEMA3DO95025 AL162377.1-201ENST00000618844 1793 ntBASIC19.39■□□□□ 0.7
SEMA3DO95025 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
SEMA3DO95025 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SEMA3DO95025 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SEMA3DO95025 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 CYP2T1P-201ENST00000432607 1285 ntBASIC19.39■□□□□ 0.69
SEMA3DO95025 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
SEMA3DO95025 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.39■□□□□ 0.69
SEMA3DO95025 AL356652.1-201ENST00000615962 565 ntBASIC19.39■□□□□ 0.69
SEMA3DO95025 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.39■□□□□ 0.69
SEMA3DO95025 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.39■□□□□ 0.69
SEMA3DO95025 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SEMA3DO95025 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
SEMA3DO95025 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SEMA3DO95025 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SEMA3DO95025 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SEMA3DO95025 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
SEMA3DO95025 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.38■□□□□ 0.69
SEMA3DO95025 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 AC007322.1-201ENST00000426983 750 ntBASIC19.38■□□□□ 0.69
SEMA3DO95025 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.38■□□□□ 0.69
SEMA3DO95025 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.38■□□□□ 0.69
SEMA3DO95025 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.38■□□□□ 0.69
SEMA3DO95025 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.38■□□□□ 0.69
SEMA3DO95025 AC069236.1-201ENST00000604339 616 ntBASIC19.38■□□□□ 0.69
SEMA3DO95025 AC092437.1-201ENST00000624794 1048 ntBASIC19.38■□□□□ 0.69
SEMA3DO95025 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SEMA3DO95025 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.37■□□□□ 0.69
SEMA3DO95025 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
SEMA3DO95025 MCRIP2P1-201ENST00000394346 511 ntBASIC19.37■□□□□ 0.69
SEMA3DO95025 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.37■□□□□ 0.69
SEMA3DO95025 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.37■□□□□ 0.69
SEMA3DO95025 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SEMA3DO95025 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.37■□□□□ 0.69
SEMA3DO95025 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.37■□□□□ 0.69
SEMA3DO95025 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SEMA3DO95025 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.36■□□□□ 0.69
SEMA3DO95025 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SEMA3DO95025 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.36■□□□□ 0.69
SEMA3DO95025 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SEMA3DO95025 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SEMA3DO95025 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 AC008694.1-202ENST00000636953 945 ntBASIC19.36■□□□□ 0.69
SEMA3DO95025 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.36■□□□□ 0.69
SEMA3DO95025 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.36■□□□□ 0.69
SEMA3DO95025 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.36■□□□□ 0.69
SEMA3DO95025 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SEMA3DO95025 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SEMA3DO95025 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms