Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.3■□□□□ 0.52
SSX4O60224 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.3■□□□□ 0.52
SSX4O60224 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.3■□□□□ 0.52
SSX4O60224 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SSX4O60224 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.3■□□□□ 0.52
SSX4O60224 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.3■□□□□ 0.52
SSX4O60224 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 KRT18P11-201ENST00000435214 1283 ntBASIC18.3■□□□□ 0.52
SSX4O60224 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.3■□□□□ 0.52
SSX4O60224 AC011767.1-201ENST00000617410 1153 ntBASIC18.3■□□□□ 0.52
SSX4O60224 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.3■□□□□ 0.52
SSX4O60224 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.3■□□□□ 0.52
SSX4O60224 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
SSX4O60224 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX4O60224 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.3■□□□□ 0.52
SSX4O60224 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SSX4O60224 AP000974.1-201ENST00000623909 2387 ntBASIC18.29■□□□□ 0.52
SSX4O60224 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.29■□□□□ 0.52
SSX4O60224 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.29■□□□□ 0.52
SSX4O60224 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.29■□□□□ 0.52
SSX4O60224 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SSX4O60224 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.29■□□□□ 0.52
SSX4O60224 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 AC027702.1-201ENST00000563810 1770 ntBASIC18.29■□□□□ 0.52
SSX4O60224 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX4O60224 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
SSX4O60224 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.28■□□□□ 0.52
SSX4O60224 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SSX4O60224 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.28■□□□□ 0.52
SSX4O60224 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.28■□□□□ 0.52
SSX4O60224 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.28■□□□□ 0.52
SSX4O60224 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.28■□□□□ 0.52
SSX4O60224 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX4O60224 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
SSX4O60224 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.27■□□□□ 0.52
SSX4O60224 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.27■□□□□ 0.52
SSX4O60224 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.27■□□□□ 0.52
SSX4O60224 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.27■□□□□ 0.52
SSX4O60224 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SSX4O60224 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX4O60224 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.27■□□□□ 0.52
SSX4O60224 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.27■□□□□ 0.52
SSX4O60224 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SSX4O60224 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SSX4O60224 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SSX4O60224 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX4O60224 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.26■□□□□ 0.51
SSX4O60224 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
SSX4O60224 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.26■□□□□ 0.51
SSX4O60224 AC005224.4-201ENST00000583262 1652 ntBASIC18.26■□□□□ 0.51
SSX4O60224 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX4O60224 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms