Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.73■□□□□ 0.91
HOXC11O43248 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.73■□□□□ 0.91
HOXC11O43248 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
HOXC11O43248 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.73■□□□□ 0.91
HOXC11O43248 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
HOXC11O43248 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.72■□□□□ 0.91
HOXC11O43248 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC11O43248 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.72■□□□□ 0.91
HOXC11O43248 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC11O43248 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC11O43248 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
HOXC11O43248 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC11O43248 AC239809.2-201ENST00000415381 517 ntBASIC20.72■□□□□ 0.91
HOXC11O43248 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
HOXC11O43248 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.72■□□□□ 0.91
HOXC11O43248 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.72■□□□□ 0.91
HOXC11O43248 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HOXC11O43248 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
HOXC11O43248 Z99916.2-201ENST00000604037 246 ntBASIC20.72■□□□□ 0.91
HOXC11O43248 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC11O43248 AL023875.1-201ENST00000640777 796 ntBASIC20.72■□□□□ 0.91
HOXC11O43248 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC11O43248 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.72■□□□□ 0.91
HOXC11O43248 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC11O43248 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC11O43248 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
HOXC11O43248 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC11O43248 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
HOXC11O43248 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC11O43248 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC11O43248 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.71■□□□□ 0.91
HOXC11O43248 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC11O43248 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC11O43248 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC11O43248 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC11O43248 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
HOXC11O43248 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC11O43248 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
HOXC11O43248 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC11O43248 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC11O43248 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC11O43248 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.7■□□□□ 0.9
HOXC11O43248 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC11O43248 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC11O43248 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC11O43248 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC11O43248 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC11O43248 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
HOXC11O43248 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC11O43248 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.7■□□□□ 0.9
HOXC11O43248 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.7■□□□□ 0.9
HOXC11O43248 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
HOXC11O43248 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC11O43248 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC11O43248 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC11O43248 SLC25A24-204ENST00000569674 2357 ntBASIC20.7■□□□□ 0.9
HOXC11O43248 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC11O43248 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC11O43248 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.69■□□□□ 0.9
HOXC11O43248 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.69■□□□□ 0.9
HOXC11O43248 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC11O43248 MIR4497-201ENST00000583208 89 ntBASIC20.69■□□□□ 0.9
HOXC11O43248 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HOXC11O43248 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HOXC11O43248 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC11O43248 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC11O43248 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC11O43248 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC11O43248 AC012618.2-201ENST00000428058 849 ntBASIC20.68■□□□□ 0.9
HOXC11O43248 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC11O43248 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC11O43248 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXC11O43248 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms