Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
AP4E1Q9UPM8 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 CROCCP5-201ENST00000436658 830 ntBASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 AC093787.1-201ENST00000450396 207 ntBASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
AP4E1Q9UPM8 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 AC010980.2-201ENST00000587099 1412 ntBASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.08■□□□□ 0.97
AP4E1Q9UPM8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
AP4E1Q9UPM8 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 AL512408.1-201ENST00000569378 2000 ntBASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 AL355472.2-201ENST00000422958 438 ntBASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 AC133552.2-202ENST00000575694 574 ntBASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 CYP2T3P-201ENST00000601990 817 ntBASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.07■□□□□ 0.96
AP4E1Q9UPM8 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 AL512625.2-201ENST00000417533 625 ntBASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.06■□□□□ 0.96
AP4E1Q9UPM8 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.05■□□□□ 0.96
AP4E1Q9UPM8 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
AP4E1Q9UPM8 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.05■□□□□ 0.96
AP4E1Q9UPM8 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
AP4E1Q9UPM8 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
AP4E1Q9UPM8 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
AP4E1Q9UPM8 KRT18P68-201ENST00000392293 1000 ntBASIC21.05■□□□□ 0.96
AP4E1Q9UPM8 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms