Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 RNA5SP413-201ENST00000516373 109 ntBASIC19.27■□□□□ 0.68
SCN3AQ9NY46 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SCN3AQ9NY46 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.27■□□□□ 0.67
SCN3AQ9NY46 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 MIR4758-201ENST00000577688 71 ntBASIC19.26■□□□□ 0.67
SCN3AQ9NY46 LINC01006-201ENST00000333319 2292 ntBASIC19.26■□□□□ 0.67
SCN3AQ9NY46 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SCN3AQ9NY46 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 AC097658.1-201ENST00000475555 843 ntBASIC19.25■□□□□ 0.67
SCN3AQ9NY46 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SCN3AQ9NY46 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 AL391422.3-201ENST00000603791 2761 ntBASIC19.24■□□□□ 0.67
SCN3AQ9NY46 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 KRT18P6-201ENST00000555540 1265 ntBASIC19.24■□□□□ 0.67
SCN3AQ9NY46 MIR4651-201ENST00000582622 73 ntBASIC19.24■□□□□ 0.67
SCN3AQ9NY46 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.24■□□□□ 0.67
SCN3AQ9NY46 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms