Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21■□□□□ 0.95
TDP1Q9NUW8 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21■□□□□ 0.95
TDP1Q9NUW8 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21■□□□□ 0.95
TDP1Q9NUW8 AC239809.2-201ENST00000415381 517 ntBASIC21■□□□□ 0.95
TDP1Q9NUW8 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TDP1Q9NUW8 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21■□□□□ 0.95
TDP1Q9NUW8 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21■□□□□ 0.95
TDP1Q9NUW8 MIR2861-201ENST00000636310 90 ntBASIC21■□□□□ 0.95
TDP1Q9NUW8 KRT8P36-201ENST00000489121 1440 ntBASIC21■□□□□ 0.95
TDP1Q9NUW8 AL024507.2-201ENST00000606070 2574 ntBASIC21■□□□□ 0.95
TDP1Q9NUW8 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TDP1Q9NUW8 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TDP1Q9NUW8 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
TDP1Q9NUW8 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 AL049796.1-201ENST00000565336 1766 ntBASIC20.99■□□□□ 0.95
TDP1Q9NUW8 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TDP1Q9NUW8 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TDP1Q9NUW8 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 AC110285.5-201ENST00000611501 352 ntBASIC20.97■□□□□ 0.95
TDP1Q9NUW8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 AC121338.2-201ENST00000622535 1744 ntBASIC20.97■□□□□ 0.95
TDP1Q9NUW8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.97■□□□□ 0.95
TDP1Q9NUW8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 KRASP1-201ENST00000407852 552 ntBASIC20.96■□□□□ 0.95
TDP1Q9NUW8 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 SNORA78-201ENST00000459373 127 ntBASIC20.96■□□□□ 0.95
TDP1Q9NUW8 AC023632.3-201ENST00000521633 145 ntBASIC20.96■□□□□ 0.95
TDP1Q9NUW8 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.96■□□□□ 0.95
TDP1Q9NUW8 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms