Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 AC007225.1-201ENST00000566331 1836 ntBASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 BCL2-203ENST00000589955 5011 ntBASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 EDA-201ENST00000338901 1233 ntBASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 MIR572-201ENST00000384983 95 ntBASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 AP001330.3-201ENST00000520123 633 ntBASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 AC106739.1-201ENST00000617035 715 ntBASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 FP700111.2-201ENST00000619190 1892 ntBASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP1AQ9HD42 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 AP004607.4-201ENST00000530158 1459 ntBASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 AL355001.2-201ENST00000620617 1191 ntBASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 RASA4CP-201ENST00000424092 1398 ntBASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP1AQ9HD42 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CHMP1AQ9HD42 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 AF213884.3-201ENST00000563833 479 ntBASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP1AQ9HD42 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms