Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.27■□□□□ 0.84
VPS13AQ96RL7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
VPS13AQ96RL7 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS13AQ96RL7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 HTR7P1-201ENST00000538670 1336 ntBASIC20.26■□□□□ 0.83
VPS13AQ96RL7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.26■□□□□ 0.83
VPS13AQ96RL7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 AL031133.1-201ENST00000406807 723 ntBASIC20.25■□□□□ 0.83
VPS13AQ96RL7 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS13AQ96RL7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 AC063952.2-201ENST00000498792 1227 ntBASIC20.24■□□□□ 0.83
VPS13AQ96RL7 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 AK4P3-201ENST00000418260 669 ntBASIC20.24■□□□□ 0.83
VPS13AQ96RL7 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13AQ96RL7 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.23■□□□□ 0.83
VPS13AQ96RL7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 AC245052.3-201ENST00000450182 901 ntBASIC20.23■□□□□ 0.83
VPS13AQ96RL7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13AQ96RL7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 FAM8A6P-201ENST00000407496 1135 ntBASIC20.22■□□□□ 0.83
VPS13AQ96RL7 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13AQ96RL7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms