Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CFAP54Q96N23 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CFAP54Q96N23 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CFAP54Q96N23 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
CFAP54Q96N23 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CFAP54Q96N23 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CFAP54Q96N23 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CFAP54Q96N23 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 AL034346.1-201ENST00000568244 1277 ntBASIC20.06■□□□□ 0.8
CFAP54Q96N23 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 KRT16P5-201ENST00000455284 522 ntBASIC20.06■□□□□ 0.8
CFAP54Q96N23 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CFAP54Q96N23 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.06■□□□□ 0.8
CFAP54Q96N23 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CFAP54Q96N23 HTR7P1-201ENST00000538670 1336 ntBASIC20.05■□□□□ 0.8
CFAP54Q96N23 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CFAP54Q96N23 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.05■□□□□ 0.8
CFAP54Q96N23 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.05■□□□□ 0.8
CFAP54Q96N23 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CFAP54Q96N23 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.05■□□□□ 0.8
CFAP54Q96N23 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.05■□□□□ 0.8
CFAP54Q96N23 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.05■□□□□ 0.8
CFAP54Q96N23 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.05■□□□□ 0.8
CFAP54Q96N23 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CFAP54Q96N23 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.05■□□□□ 0.8
CFAP54Q96N23 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.04■□□□□ 0.8
CFAP54Q96N23 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
CFAP54Q96N23 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CFAP54Q96N23 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.04■□□□□ 0.8
CFAP54Q96N23 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CFAP54Q96N23 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CFAP54Q96N23 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CFAP54Q96N23 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CFAP54Q96N23 SLC25A1P4-201ENST00000567977 778 ntBASIC20.04■□□□□ 0.8
CFAP54Q96N23 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
CFAP54Q96N23 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CFAP54Q96N23 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.03■□□□□ 0.8
CFAP54Q96N23 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.03■□□□□ 0.8
CFAP54Q96N23 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CFAP54Q96N23 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CFAP54Q96N23 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.02■□□□□ 0.8
CFAP54Q96N23 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.02■□□□□ 0.8
CFAP54Q96N23 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CFAP54Q96N23 AC116407.4-201ENST00000623319 1061 ntBASIC20.02■□□□□ 0.8
CFAP54Q96N23 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CFAP54Q96N23 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CFAP54Q96N23 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.02■□□□□ 0.8
CFAP54Q96N23 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CFAP54Q96N23 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.02■□□□□ 0.8
CFAP54Q96N23 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CFAP54Q96N23 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CFAP54Q96N23 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.02■□□□□ 0.8
CFAP54Q96N23 FAM86EP-206ENST00000510506 987 ntBASIC20.02■□□□□ 0.8
CFAP54Q96N23 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.02■□□□□ 0.8
CFAP54Q96N23 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CFAP54Q96N23 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CFAP54Q96N23 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.02■□□□□ 0.79
CFAP54Q96N23 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
CFAP54Q96N23 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.01■□□□□ 0.79
CFAP54Q96N23 AC091799.1-201ENST00000422823 811 ntBASIC20.01■□□□□ 0.79
CFAP54Q96N23 CR769767.2-201ENST00000622735 460 ntBASIC20.01■□□□□ 0.79
CFAP54Q96N23 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CFAP54Q96N23 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.01■□□□□ 0.79
CFAP54Q96N23 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.01■□□□□ 0.79
CFAP54Q96N23 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms