Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 NEU4-212ENST00000435894 484 ntTSL 425.73■■□□□ 1.712e-17■■□□□ 14.2
DDX55Q8NHQ9 NEU4-207ENST00000420288 845 ntTSL 323.72■■□□□ 1.392e-17■■□□□ 14.2
DDX55Q8NHQ9 NEU4-210ENST00000428592 505 ntTSL 422.01■■□□□ 1.112e-17■■□□□ 14.2
DDX55Q8NHQ9 NEU4-208ENST00000423583 753 ntTSL 521.53■■□□□ 1.042e-17■■□□□ 14.2
DDX55Q8NHQ9 NEU4-213ENST00000435934 451 ntTSL 420.83■□□□□ 0.932e-17■■□□□ 14.2
DDX55Q8NHQ9 NEU4-209ENST00000426032 676 ntTSL 320.78■□□□□ 0.922e-17■■□□□ 14.2
DDX55Q8NHQ9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.392e-19■■□□□ 14.2
DDX55Q8NHQ9 GDI1-207ENST00000468483 2417 ntTSL 1 (best)13.27□□□□□ -0.292e-19■■□□□ 14.2
DDX55Q8NHQ9 GDI1-214ENST00000491154 4069 ntTSL 210.57□□□□□ -0.722e-19■■□□□ 14.2
DDX55Q8NHQ9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.712e-13■■□□□ 14.2
DDX55Q8NHQ9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.525e-7■■□□□ 14.2
DDX55Q8NHQ9 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC15.35■□□□□ 0.055e-7■■□□□ 14.2
DDX55Q8NHQ9 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.015e-7■■□□□ 14.2
DDX55Q8NHQ9 HECTD1-208ENST00000554882 3748 ntTSL 55.97□□□□□ -1.455e-7■■□□□ 14.2
DDX55Q8NHQ9 HECTD1-210ENST00000555843 4281 ntTSL 25.02□□□□□ -1.615e-7■■□□□ 14.2
DDX55Q8NHQ9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.229e-7■■□□□ 14.2
DDX55Q8NHQ9 MYDGF-204ENST00000599761 463 ntTSL 315.4■□□□□ 0.069e-7■■□□□ 14.2
DDX55Q8NHQ9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.129e-15■■□□□ 14.1
DDX55Q8NHQ9 UQCC2-203ENST00000606961 4365 nt14.04□□□□□ -0.162e-11■■□□□ 14.1
DDX55Q8NHQ9 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.922e-6■■□□□ 14.1
DDX55Q8NHQ9 RBBP4-201ENST00000373485 1417 ntAPPRIS ALT1 TSL 1 (best) BASIC11□□□□□ -0.657e-7■■□□□ 14.1
DDX55Q8NHQ9 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.117e-7■■□□□ 14.1
DDX55Q8NHQ9 RBBP4-212ENST00000482190 616 ntTSL 34.91□□□□□ -1.627e-7■■□□□ 14.1
DDX55Q8NHQ9 RBBP4-207ENST00000460669 783 ntTSL 54.46□□□□□ -1.77e-7■■□□□ 14.1
DDX55Q8NHQ9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.23■□□□□ 0.993e-10■■□□□ 14.1
DDX55Q8NHQ9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.993e-10■■□□□ 14.1
DDX55Q8NHQ9 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.097e-7■■□□□ 14.1
DDX55Q8NHQ9 UQCC2-202ENST00000374231 509 ntTSL 317.82■□□□□ 0.446e-12■■□□□ 14.1
DDX55Q8NHQ9 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.286e-12■■□□□ 14.1
DDX55Q8NHQ9 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC16.67■□□□□ 0.266e-12■■□□□ 14.1
DDX55Q8NHQ9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.137e-8■■□□□ 14.1
DDX55Q8NHQ9 SHMT2-233ENST00000557529 1369 ntTSL 214.13□□□□□ -0.153e-33■■□□□ 14.1
DDX55Q8NHQ9 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC14.32□□□□□ -0.124e-17■■□□□ 14.1
DDX55Q8NHQ9 EIF4G1-221ENST00000441154 4311 ntTSL 5 BASIC11.95□□□□□ -0.54e-17■■□□□ 14.1
DDX55Q8NHQ9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.92■□□□□ 0.782e-25■■□□□ 14.1
DDX55Q8NHQ9 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.032e-25■■□□□ 14.1
DDX55Q8NHQ9 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.162e-25■■□□□ 14.1
DDX55Q8NHQ9 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.511e-8■■□□□ 14.1
DDX55Q8NHQ9 TMED1-202ENST00000586835 713 ntTSL 216.41■□□□□ 0.221e-8■■□□□ 14.1
DDX55Q8NHQ9 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.06■□□□□ 0.482e-12■■□□□ 14.1
DDX55Q8NHQ9 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC16.22■□□□□ 0.192e-12■■□□□ 14.1
DDX55Q8NHQ9 ERP29-201ENST00000261735 1735 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.332e-12■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.37■□□□□ 0.695e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.47■□□□□ 0.395e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC16.85■□□□□ 0.295e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.295e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-229ENST00000561038 2160 ntTSL 1 (best)16.4■□□□□ 0.225e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC15.6■□□□□ 0.095e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC15.46■□□□□ 0.075e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-224ENST00000559910 1562 ntTSL 5 BASIC15.41■□□□□ 0.065e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-201ENST00000348719 1684 ntTSL 5 BASIC15.38■□□□□ 0.055e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-218ENST00000559287 1748 ntTSL 1 (best)14.35□□□□□ -0.115e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-214ENST00000558865 735 ntTSL 513.83□□□□□ -0.25e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-202ENST00000355299 1972 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.275e-7■■□□□ 14.1
DDX55Q8NHQ9 GMPR2-203ENST00000399440 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.865e-7■■□□□ 14.1
DDX55Q8NHQ9 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.84e-76■■□□□ 14.1
DDX55Q8NHQ9 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC19.28■□□□□ 0.684e-10■■□□□ 14.1
DDX55Q8NHQ9 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.524e-10■■□□□ 14.1
DDX55Q8NHQ9 GABARAPL2-204ENST00000565985 2274 nt8.41□□□□□ -1.064e-10■■□□□ 14.1
DDX55Q8NHQ9 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.8■□□□□ 0.123e-8■■□□□ 14.1
DDX55Q8NHQ9 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.173e-8■■□□□ 14.1
DDX55Q8NHQ9 SRC-203ENST00000373567 4321 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.363e-8■■□□□ 14.1
DDX55Q8NHQ9 SRC-201ENST00000358208 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.513e-8■■□□□ 14.1
DDX55Q8NHQ9 INPPL1-202ENST00000320683 717 ntTSL 229.5■■■□□ 2.318e-8■■□□□ 14.1
DDX55Q8NHQ9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.955e-9■■□□□ 14.1
DDX55Q8NHQ9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.43■■□□□ 1.828e-8■■□□□ 14.1
DDX55Q8NHQ9 LTBP3-214ENST00000529582 1889 ntTSL 526■■□□□ 1.758e-8■■□□□ 14.1
DDX55Q8NHQ9 NUBP2-215ENST00000568834 1173 ntTSL 223.69■■□□□ 1.385e-9■■□□□ 14.1
DDX55Q8NHQ9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.245e-9■■□□□ 14.1
DDX55Q8NHQ9 NUBP2-211ENST00000567700 2196 ntTSL 222.49■■□□□ 1.195e-9■■□□□ 14.1
DDX55Q8NHQ9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.178e-8■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.958e-8■■□□□ 14.1
DDX55Q8NHQ9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.92■□□□□ 0.948e-8■■□□□ 14.1
DDX55Q8NHQ9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.848e-8■■□□□ 14.1
DDX55Q8NHQ9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.19■□□□□ 0.828e-8■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-213ENST00000481223 2815 ntTSL 219.78■□□□□ 0.768e-8■■□□□ 14.1
DDX55Q8NHQ9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.678e-8■■□□□ 14.1
DDX55Q8NHQ9 INPPL1-212ENST00000541752 856 ntTSL 219.18■□□□□ 0.668e-8■■□□□ 14.1
DDX55Q8NHQ9 LTBP3-210ENST00000528516 3935 ntTSL 1 (best)18.81■□□□□ 0.68e-8■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.65■□□□□ 0.588e-8■■□□□ 14.1
DDX55Q8NHQ9 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.425e-9■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-215ENST00000482621 2059 ntTSL 217.67■□□□□ 0.428e-8■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-206ENST00000463260 1941 ntTSL 1 (best)17.57■□□□□ 0.48e-8■■□□□ 14.1
DDX55Q8NHQ9 AKAP9-210ENST00000486313 584 ntTSL 316.78■□□□□ 0.288e-8■■□□□ 14.1
DDX55Q8NHQ9 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.265e-9■■□□□ 14.1
DDX55Q8NHQ9 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.245e-9■■□□□ 14.1
DDX55Q8NHQ9 GUK1-233ENST00000491613 959 ntTSL 316.5■□□□□ 0.236e-22■■□□□ 14.1
DDX55Q8NHQ9 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.42■□□□□ 0.068e-8■■□□□ 14.1
DDX55Q8NHQ9 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC14.76□□□□□ -0.058e-8■■□□□ 14.1
DDX55Q8NHQ9 COX6B1-201ENST00000246554 667 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.055e-8■■□□□ 14.1
DDX55Q8NHQ9 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.15e-7■■□□□ 14.1
DDX55Q8NHQ9 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.15e-7■■□□□ 14.1
DDX55Q8NHQ9 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.114e-6■■□□□ 14.1
DDX55Q8NHQ9 MDH2-204ENST00000443006 2020 ntTSL 2 BASIC14.22□□□□□ -0.138e-8■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-214ENST00000482365 2620 ntTSL 214.12□□□□□ -0.158e-8■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-218ENST00000496007 4452 ntTSL 213.99□□□□□ -0.178e-8■■□□□ 14.1
DDX55Q8NHQ9 CCNL2-211ENST00000480479 2792 ntTSL 213.48□□□□□ -0.258e-8■■□□□ 14.1
DDX55Q8NHQ9 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.295e-7■■□□□ 14.1
DDX55Q8NHQ9 UNC13D-202ENST00000412096 3648 ntTSL 2 BASIC12.86□□□□□ -0.354e-6■■□□□ 14.1
DDX55Q8NHQ9 MDH2-201ENST00000315758 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.48e-8■■□□□ 14.1
Retrieved 100 of 15,504 protein–RNA pairs in 158.5 ms