RNA–Protein interactions for RNA: ENST00000528516.5

LTBP3-210, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 1 (best)

Gene LTBP3, Length 3,935 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-210ENST00000528516 NISCHQ9Y2I1 1504 aa33.91■■■■□ 3.02
LTBP3-210ENST00000528516 DCAF8L2P0C7V8 631 aa31.27■■■□□ 2.6
LTBP3-210ENST00000528516 SUPT5HO00267 1087 aaKnown RBP30.57■■■□□ 2.48
LTBP3-210ENST00000528516 SHROOM4Q9ULL8 1493 aa30.44■■■□□ 2.46
LTBP3-210ENST00000528516 EHMT2Q96KQ7 1210 aa29.58■■■□□ 2.33
LTBP3-210ENST00000528516 HRCP23327 699 aa29.57■■■□□ 2.32
LTBP3-210ENST00000528516 PCGF6Q9BYE7 350 aa29.31■■■□□ 2.28
LTBP3-210ENST00000528516 PPARGC1BQ86YN6 1023 aaKnown RBP29.22■■■□□ 2.27
LTBP3-210ENST00000528516 PELP1Q8IZL8 1130 aaKnown RBP28.96■■■□□ 2.23
LTBP3-210ENST00000528516 FAM9AQ8IZU1 332 aaPredicted RBP28.79■■■□□ 2.2
LTBP3-210ENST00000528516 CCDC180Q9P1Z9 1646 aa28.74■■■□□ 2.19
LTBP3-210ENST00000528516 TTBK1Q5TCY1 1321 aaPredicted RBP28.49■■■□□ 2.15
LTBP3-210ENST00000528516 ZCCHC6Q5VYS8 1495 aaKnown RBP28.4■■■□□ 2.14
LTBP3-210ENST00000528516 CHIC1Q5VXU3 224 aa28.39■■■□□ 2.14
LTBP3-210ENST00000528516 MYO15BQ96JP2 1530 aa28.26■■■□□ 2.11
LTBP3-210ENST00000528516 ABCC9O60706 1549 aa28.2■■■□□ 2.11
LTBP3-210ENST00000528516 SCAF1Q9H7N4 1312 aaKnown RBP28.1■■■□□ 2.09
LTBP3-210ENST00000528516 LOC105371045A0A1W2PR82 267 aa28.09■■■□□ 2.09
LTBP3-210ENST00000528516 TRIM26Q12899 539 aaPredicted RBP28.01■■■□□ 2.08
LTBP3-210ENST00000528516 ZEB1P37275 1124 aaPredicted RBP27.91■■■□□ 2.06
LTBP3-210ENST00000528516 MYT1Q01538 1121 aa27.91■■■□□ 2.06
LTBP3-210ENST00000528516 TRIM41Q8WV44 630 aa27.87■■■□□ 2.05
LTBP3-210ENST00000528516 RANGAP1P46060 587 aaPredicted RBP27.85■■■□□ 2.05
LTBP3-210ENST00000528516 DCAF1Q9Y4B6 1507 aa27.66■■■□□ 2.02
LTBP3-210ENST00000528516 SCRIBQ14160 1630 aa27.46■■□□□ 1.99
LTBP3-210ENST00000528516 ACIN1Q9UKV3 1341 aaKnown RBP27.45■■□□□ 1.99
LTBP3-210ENST00000528516 CENPBP07199 599 aaPredicted RBP27.44■■□□□ 1.98
LTBP3-210ENST00000528516 CCER1Q8TC90 406 aaPredicted RBP27.44■■□□□ 1.98
LTBP3-210ENST00000528516 GTF3C3Q9Y5Q9 886 aa27.44■■□□□ 1.98
LTBP3-210ENST00000528516 NEUROD1Q13562 356 aa27.39■■□□□ 1.98
LTBP3-210ENST00000528516 UBTFP17480 764 aaKnown RBP27.24■■□□□ 1.95
LTBP3-210ENST00000528516 APLP2Q06481 763 aa27.23■■□□□ 1.95
LTBP3-210ENST00000528516 PABPN1Q86U42 306 aaKnown RBP eCLIP27.15■■□□□ 1.941e-7■■■□□ 15.4
LTBP3-210ENST00000528516 YTHDC1Q96MU7 727 aaKnown RBP27.15■■□□□ 1.94
LTBP3-210ENST00000528516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.08■■□□□ 1.93
LTBP3-210ENST00000528516 DIEXFQ68CQ4 756 aaKnown RBP27.07■■□□□ 1.92
LTBP3-210ENST00000528516 NACADO15069 1562 aa27.05■■□□□ 1.92
LTBP3-210ENST00000528516 RB1CC1Q8TDY2 1594 aa26.9■■□□□ 1.9
LTBP3-210ENST00000528516 ATP1B4Q9UN42 357 aaPredicted RBP26.87■■□□□ 1.89
LTBP3-210ENST00000528516 HNRNPUL2Q1KMD3 747 aaKnown RBP26.76■■□□□ 1.87
LTBP3-210ENST00000528516 CECR2Q9BXF3 1484 aa26.73■■□□□ 1.87
LTBP3-210ENST00000528516 RSF1Q96T23 1441 aaPredicted RBP26.72■■□□□ 1.87
LTBP3-210ENST00000528516 ITGAEP38570 1179 aa26.66■■□□□ 1.86
LTBP3-210ENST00000528516 MROH2BQ7Z745 1585 aa26.43■■□□□ 1.82
LTBP3-210ENST00000528516 ZNF316A6NFI3 1004 aaPredicted RBP26.38■■□□□ 1.81
LTBP3-210ENST00000528516 MIER1Q8N108 512 aa26.25■■□□□ 1.79
LTBP3-210ENST00000528516 WIZO95785 1651 aa26.2■■□□□ 1.78
LTBP3-210ENST00000528516 BAZ1AQ9NRL2 1556 aaPredicted RBP26.13■■□□□ 1.77
LTBP3-210ENST00000528516 CNGB1Q14028 1251 aaPredicted RBP26.13■■□□□ 1.77
LTBP3-210ENST00000528516 BCL11AQ9H165 835 aa26.13■■□□□ 1.77
LTBP3-210ENST00000528516 ANP32EQ9BTT0 268 aa26.01■■□□□ 1.75
LTBP3-210ENST00000528516 UNC13AQ9UPW8 1703 aa26■■□□□ 1.75
LTBP3-210ENST00000528516 BICRAQ9NZM4 1560 aa25.91■■□□□ 1.74
LTBP3-210ENST00000528516 SMARCA4P51532 1647 aa25.89■■□□□ 1.74
LTBP3-210ENST00000528516 SUPT16HQ9Y5B9 1047 aaKnown RBP25.86■■□□□ 1.73
LTBP3-210ENST00000528516 BCANQ96GW7 911 aa25.86■■□□□ 1.73
LTBP3-210ENST00000528516 POLR3GLQ9BT43 218 aa25.78■■□□□ 1.72
LTBP3-210ENST00000528516 CCDC88BA6NC98 1476 aa25.78■■□□□ 1.72
LTBP3-210ENST00000528516 CSRNP3Q8WYN3 585 aa25.77■■□□□ 1.72
LTBP3-210ENST00000528516 TSHZ2Q9NRE2 1034 aa25.76■■□□□ 1.71
LTBP3-210ENST00000528516 FAM50AQ14320 339 aaKnown RBP25.71■■□□□ 1.71
LTBP3-210ENST00000528516 NEFLP07196 543 aa25.69■■□□□ 1.7
LTBP3-210ENST00000528516 P3H3Q8IVL6 736 aa25.69■■□□□ 1.7
LTBP3-210ENST00000528516 TOP2AP11388 1531 aaKnown RBP25.67■■□□□ 1.7
LTBP3-210ENST00000528516 BAZ1BQ9UIG0 1483 aaKnown RBP25.67■■□□□ 1.7
LTBP3-210ENST00000528516 CLSPNQ9HAW4 1339 aa25.65■■□□□ 1.7
LTBP3-210ENST00000528516 ATAD2BQ9ULI0 1458 aa25.6■■□□□ 1.69
LTBP3-210ENST00000528516 ERICH6Q7L0X2 663 aa25.57■■□□□ 1.68
LTBP3-210ENST00000528516 ABCC8Q09428 1581 aa25.57■■□□□ 1.68
LTBP3-210ENST00000528516 ARID3CA6NKF2 412 aa25.51■■□□□ 1.67
LTBP3-210ENST00000528516 SMARCA2P51531 1590 aa25.5■■□□□ 1.67
LTBP3-210ENST00000528516 FKBP8Q14318 412 aa25.47■■□□□ 1.67
LTBP3-210ENST00000528516 CEP162Q5TB80 1403 aa25.43■■□□□ 1.66
LTBP3-210ENST00000528516 EIF4G1Q04637 1599 aaKnown RBP25.34■■□□□ 1.65
LTBP3-210ENST00000528516 HIRIP3Q9BW71 556 aaPredicted RBP25.31■■□□□ 1.64
LTBP3-210ENST00000528516 WRNQ14191 1432 aaPredicted RBP eCLIP25.31■■□□□ 1.64
LTBP3-210ENST00000528516 SOGA1O94964 1423 aa25.3■■□□□ 1.64
LTBP3-210ENST00000528516 TRIM52Q96A61 297 aa25.27■■□□□ 1.64
LTBP3-210ENST00000528516 RBM19Q9Y4C8 960 aaKnown RBP25.26■■□□□ 1.63
LTBP3-210ENST00000528516 ZNF326Q5BKZ1 582 aaKnown RBP25.18■■□□□ 1.62
LTBP3-210ENST00000528516 KCNH8Q96L42 1107 aa25.17■■□□□ 1.62
LTBP3-210ENST00000528516 RUSC2Q8N2Y8 1516 aa25.14■■□□□ 1.62
LTBP3-210ENST00000528516 DDX10Q13206 875 aaKnown RBP25.14■■□□□ 1.61
LTBP3-210ENST00000528516 NCAPD3P42695 1498 aa25.12■■□□□ 1.61
LTBP3-210ENST00000528516 TNIKQ9UKE5 1360 aa25.12■■□□□ 1.61
LTBP3-210ENST00000528516 PEG3Q9GZU2 1588 aa25.1■■□□□ 1.61
LTBP3-210ENST00000528516 MYT1LQ9UL68 1186 aa25.01■■□□□ 1.59
LTBP3-210ENST00000528516 PRKCSHP14314 528 aaPredicted RBP25■■□□□ 1.59
LTBP3-210ENST00000528516 DNAJC5BQ9UF47 199 aa25■■□□□ 1.59
LTBP3-210ENST00000528516 FBLN2P98095 1184 aa24.97■■□□□ 1.59
LTBP3-210ENST00000528516 ANP32CO43423 234 aa24.96■■□□□ 1.59
LTBP3-210ENST00000528516 CDK11AQ9UQ88 783 aaPredicted RBP24.96■■□□□ 1.59
LTBP3-210ENST00000528516 SENP3-EIF4A1A0A087X0R7 540 aa24.96■■□□□ 1.59
LTBP3-210ENST00000528516 CC2D2AQ9P2K1 1620 aa24.95■■□□□ 1.58
LTBP3-210ENST00000528516 CHIC2Q9UKJ5 165 aa24.91■■□□□ 1.58
LTBP3-210ENST00000528516 IRX6P78412 446 aaPredicted RBP24.89■■□□□ 1.57
LTBP3-210ENST00000528516 SYNJ1O43426 1573 aa24.88■■□□□ 1.57
LTBP3-210ENST00000528516 CLIP1P30622 1438 aa24.88■■□□□ 1.57
LTBP3-210ENST00000528516 CADPSQ9ULU8 1353 aa24.87■■□□□ 1.57
LTBP3-210ENST00000528516 HMGXB3Q12766 1538 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 658.9 ms