Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.33■■□□□ 1.33
SH3RF1Q7Z6J0 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.33■■□□□ 1.32
SH3RF1Q7Z6J0 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
SH3RF1Q7Z6J0 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SH3RF1Q7Z6J0 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SH3RF1Q7Z6J0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
SH3RF1Q7Z6J0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
SH3RF1Q7Z6J0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.33■■□□□ 1.32
SH3RF1Q7Z6J0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 LSM12P1-201ENST00000411836 588 ntBASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 LINC01006-201ENST00000333319 2292 ntBASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.32■■□□□ 1.32
SH3RF1Q7Z6J0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 AC211429.1-201ENST00000415277 523 ntBASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 FAM210CP-201ENST00000445714 574 ntBASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 RPPH1-201ENST00000516869 333 ntBASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 Z99916.2-201ENST00000604037 246 ntBASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 KRT17P1-201ENST00000399211 1546 ntBASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SH3RF1Q7Z6J0 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 AL355472.2-201ENST00000422958 438 ntBASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SH3RF1Q7Z6J0 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 MIR718-201ENST00000390190 70 ntBASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 POU5F1P4-201ENST00000413175 1085 ntBASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SH3RF1Q7Z6J0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 C1QBPP2-201ENST00000528754 825 ntBASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 FAM197Y4-202ENST00000622692 608 ntBASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 AP005212.1-201ENST00000581547 1997 ntBASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SH3RF1Q7Z6J0 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 RNF121-214ENST00000533380 870 ntTSL 3 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 MAX-217ENST00000557277 728 ntTSL 3 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 AC010331.1-201ENST00000611423 582 ntBASIC23.27■■□□□ 1.32
SH3RF1Q7Z6J0 REXO1L12P-201ENST00000622156 912 ntBASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms