Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 DUX4L26-201ENST00000489078 1255 ntBASIC14.25□□□□□ -0.13
CSMD3Q7Z407 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 PALM-207ENST00000590161 2137 ntTSL 4 BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CSMD3Q7Z407 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 AC009947.2-201ENST00000444014 672 ntBASIC14.24□□□□□ -0.13
CSMD3Q7Z407 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CSMD3Q7Z407 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 STK25-205ENST00000405883 1904 ntTSL 2 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 AC006557.6-201ENST00000623071 864 ntBASIC14.23□□□□□ -0.13
CSMD3Q7Z407 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 LINC01568-207ENST00000641790 1380 ntBASIC14.23□□□□□ -0.13
CSMD3Q7Z407 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC14.23□□□□□ -0.13
CSMD3Q7Z407 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 ME2-208ENST00000638937 2471 ntTSL 5 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CSMD3Q7Z407 AC005363.2-201ENST00000618631 242 ntBASIC14.22□□□□□ -0.13
CSMD3Q7Z407 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 HTR7P1-201ENST00000538670 1336 ntBASIC14.21□□□□□ -0.13
CSMD3Q7Z407 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 TREX2-204ENST00000370212 861 ntTSL 5 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms