Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM40Q6P9F5 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 PGM5P4-201ENST00000421970 445 ntBASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM40Q6P9F5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 OR10C1-204ENST00000622521 1039 ntBASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 MIR2861-201ENST00000636310 90 ntBASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM40Q6P9F5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 AC073314.1-201ENST00000568729 2216 ntBASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 MIR663A-201ENST00000385250 93 ntBASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 RAP2CP1-201ENST00000605103 478 ntBASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 CYP21A1P-202ENST00000354927 1481 ntBASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM40Q6P9F5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 AC092667.1-201ENST00000434301 2586 ntBASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms