Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 VPS34YLR240W 2628 nt2.53□□□□□ -2
SSM4P40318 IRA2YOL081W 9240 nt2.53□□□□□ -2
SSM4P40318 RBK1YCR036W 1002 nt2.53□□□□□ -2
SSM4P40318 YDL041WYDL041W 354 nt2.53□□□□□ -2
SSM4P40318 SMD1YGR074W 441 nt2.53□□□□□ -2
SSM4P40318 NOP10YHR072W-A 177 nt2.53□□□□□ -2
SSM4P40318 NBL1YHR199C-A 222 nt2.53□□□□□ -2
SSM4P40318 MSL1YIR009W 336 nt2.53□□□□□ -2
SSM4P40318 YKL202WYKL202W 582 nt2.53□□□□□ -2
SSM4P40318 YNL010WYNL010W 726 nt2.53□□□□□ -2
SSM4P40318 TSC3YBR058C-A 243 nt2.53□□□□□ -2
SSM4P40318 ATP17YDR377W 306 nt2.52□□□□□ -2.01
SSM4P40318 YFL019CYFL019C 354 nt2.52□□□□□ -2.01
SSM4P40318 snR13snR13 124 nt2.52□□□□□ -2.01
SSM4P40318 PRM3YPL192C 402 nt2.52□□□□□ -2.01
SSM4P40318 YPR177CYPR177C 372 nt2.52□□□□□ -2.01
SSM4P40318 FAB1YFR019W 6837 nt2.52□□□□□ -2.01
SSM4P40318 TOF1YNL273W 3717 nt2.52□□□□□ -2.01
SSM4P40318 YPR097WYPR097W 3222 nt2.51□□□□□ -2.01
SSM4P40318 YER006C-AYER006C-A 318 nt2.51□□□□□ -2.01
SSM4P40318 YGR025WYGR025W 303 nt2.51□□□□□ -2.01
SSM4P40318 YGR042WYGR042W 816 nt2.51□□□□□ -2.01
SSM4P40318 BFA1YJR053W 1725 nt2.51□□□□□ -2.01
SSM4P40318 MET18YIL128W 3099 nt2.51□□□□□ -2.01
SSM4P40318 RRP6YOR001W 2202 nt2.51□□□□□ -2.01
SSM4P40318 CDC53YDL132W 2448 nt2.5□□□□□ -2.01
SSM4P40318 RTP1YMR185W 2946 nt2.5□□□□□ -2.01
SSM4P40318 HUR1YGL168W 333 nt2.5□□□□□ -2.01
SSM4P40318 PET191YJR034W 327 nt2.5□□□□□ -2.01
SSM4P40318 UTP30YKR060W 825 nt2.5□□□□□ -2.01
SSM4P40318 COX7YMR256C 183 nt2.5□□□□□ -2.01
SSM4P40318 CMC2YBL059C-A 330 nt2.5□□□□□ -2.01
SSM4P40318 YMR324CYMR324C 243 nt2.5□□□□□ -2.01
SSM4P40318 VPS35YJL154C 2835 nt2.5□□□□□ -2.01
SSM4P40318 PSD2YGR170W 3417 nt2.5□□□□□ -2.01
SSM4P40318 IRC10YOL015W 1761 nt2.5□□□□□ -2.01
SSM4P40318 SWR1YDR334W 4545 nt2.49□□□□□ -2.01
SSM4P40318 YRB1YDR002W 606 nt2.49□□□□□ -2.01
SSM4P40318 YER068C-AYER068C-A 432 nt2.49□□□□□ -2.01
SSM4P40318 RPS17AYML024W 411 nt2.49□□□□□ -2.01
SSM4P40318 YMR153C-AYMR153C-A 336 nt2.49□□□□□ -2.01
SSM4P40318 YLR406C-AYLR406C-A 150 nt2.48□□□□□ -2.01
SSM4P40318 VTI1YMR197C 654 nt2.48□□□□□ -2.01
SSM4P40318 CDC24YAL041W 2565 nt2.48□□□□□ -2.01
SSM4P40318 TRA1YHR099W 11235 nt2.48□□□□□ -2.01
SSM4P40318 TRM3YDL112W 4311 nt2.48□□□□□ -2.01
SSM4P40318 SPO22YIL073C 2928 nt2.47□□□□□ -2.01
SSM4P40318 UBR1YGR184C 5853 nt2.47□□□□□ -2.01
SSM4P40318 SNC1YAL030W 354 nt2.47□□□□□ -2.01
SSM4P40318 SEC22YLR268W 645 nt2.47□□□□□ -2.01
SSM4P40318 RTC6YPL183W-A 282 nt2.47□□□□□ -2.01
SSM4P40318 SIR4YDR227W 4077 nt2.47□□□□□ -2.01
SSM4P40318 STH1YIL126W 4080 nt2.47□□□□□ -2.01
SSM4P40318 AFI1YOR129C 2682 nt2.47□□□□□ -2.01
SSM4P40318 CDC50YCR094W 1176 nt2.46□□□□□ -2.02
SSM4P40318 YFH1YDL120W 525 nt2.46□□□□□ -2.02
SSM4P40318 YER121WYER121W 345 nt2.46□□□□□ -2.02
SSM4P40318 BNI1YNL271C 5862 nt2.46□□□□□ -2.02
SSM4P40318 PHO2YDL106C 1680 nt2.46□□□□□ -2.02
SSM4P40318 RRF1YHR038W 693 nt2.45□□□□□ -2.02
SSM4P40318 COA6YMR244C-A 315 nt2.45□□□□□ -2.02
SSM4P40318 TIF11YMR260C 462 nt2.45□□□□□ -2.02
SSM4P40318 YBR032WYBR032W 303 nt2.45□□□□□ -2.02
SSM4P40318 NIC96YFR002W 2520 nt2.45□□□□□ -2.02
SSM4P40318 SPC72YAL047C 1869 nt2.45□□□□□ -2.02
SSM4P40318 TIM9YEL020W-A 264 nt2.44□□□□□ -2.02
SSM4P40318 YER135CYER135C 393 nt2.44□□□□□ -2.02
SSM4P40318 AGA2YGL032C 264 nt2.44□□□□□ -2.02
SSM4P40318 CDC33YOL139C 642 nt2.44□□□□□ -2.02
SSM4P40318 YJR098CYJR098C 1971 nt2.44□□□□□ -2.02
SSM4P40318 MRP10YDL045W-A 288 nt2.43□□□□□ -2.02
SSM4P40318 snR79snR79 84 nt2.43□□□□□ -2.02
SSM4P40318 YDR114CYDR114C 303 nt2.43□□□□□ -2.02
SSM4P40318 LSO2YGR169C-A 279 nt2.43□□□□□ -2.02
SSM4P40318 RPS18BYML026C 441 nt2.43□□□□□ -2.02
SSM4P40318 ERP4YOR016C 624 nt2.43□□□□□ -2.02
SSM4P40318 SNC2YOR327C 348 nt2.43□□□□□ -2.02
SSM4P40318 BUD2YKL092C 3315 nt2.43□□□□□ -2.02
SSM4P40318 NFU1YKL040C 771 nt2.42□□□□□ -2.02
SSM4P40318 RRT1YBL048W 312 nt2.42□□□□□ -2.02
SSM4P40318 COX1Q0045 1605 nt2.42□□□□□ -2.02
SSM4P40318 YSW1YBR148W 1830 nt2.42□□□□□ -2.02
SSM4P40318 CRG1YHR209W 876 nt2.42□□□□□ -2.02
SSM4P40318 ZEO1YOL109W 342 nt2.42□□□□□ -2.02
SSM4P40318 KAR3YPR141C 2190 nt2.41□□□□□ -2.02
SSM4P40318 COS111YBR203W 2775 nt2.41□□□□□ -2.02
SSM4P40318 CRM1YGR218W 3255 nt2.41□□□□□ -2.02
SSM4P40318 VPS8YAL002W 3825 nt2.41□□□□□ -2.02
SSM4P40318 RTT107YHR154W 3213 nt2.41□□□□□ -2.02
SSM4P40318 YDR286CYDR286C 345 nt2.41□□□□□ -2.02
SSM4P40318 IES5YER092W 378 nt2.41□□□□□ -2.02
SSM4P40318 TMA22YJR014W 597 nt2.41□□□□□ -2.02
SSM4P40318 YOR333CYOR333C 417 nt2.41□□□□□ -2.02
SSM4P40318 YHR139C-AYHR139C-A 312 nt2.4□□□□□ -2.03
SSM4P40318 FCF2YLR051C 654 nt2.4□□□□□ -2.03
SSM4P40318 ARP7YPR034W 1434 nt2.39□□□□□ -2.03
SSM4P40318 SOK2YMR016C 2358 nt2.39□□□□□ -2.03
SSM4P40318 SGD1YLR336C 2700 nt2.39□□□□□ -2.03
SSM4P40318 YLR154W-FYLR154W-F 141 nt2.39□□□□□ -2.03
SSM4P40318 MSS11YMR164C 2277 nt2.38□□□□□ -2.03
Retrieved 100 of 7,029 protein–RNA pairs in 49.4 ms