Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VIMP08670 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
VIMP08670 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.37■□□□□ 0.85
VIMP08670 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VIMP08670 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
VIMP08670 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VIMP08670 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
VIMP08670 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
VIMP08670 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.36■□□□□ 0.85
VIMP08670 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
VIMP08670 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.36■□□□□ 0.85
VIMP08670 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
VIMP08670 AC026471.1-201ENST00000564629 3026 ntBASIC20.36■□□□□ 0.85
VIMP08670 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.36■□□□□ 0.85
VIMP08670 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VIMP08670 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VIMP08670 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.35■□□□□ 0.85
VIMP08670 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.35■□□□□ 0.85
VIMP08670 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
VIMP08670 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.35■□□□□ 0.85
VIMP08670 TSPY9P-201ENST00000440215 945 ntBASIC20.35■□□□□ 0.85
VIMP08670 TSPY11P-201ENST00000442607 1045 ntBASIC20.35■□□□□ 0.85
VIMP08670 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.35■□□□□ 0.85
VIMP08670 MIR4787-201ENST00000607364 84 ntBASIC20.35■□□□□ 0.85
VIMP08670 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
VIMP08670 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.35■□□□□ 0.85
VIMP08670 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.35■□□□□ 0.85
VIMP08670 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.35■□□□□ 0.85
VIMP08670 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.35■□□□□ 0.85
VIMP08670 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VIMP08670 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VIMP08670 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VIMP08670 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.34■□□□□ 0.85
VIMP08670 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 AC090340.1-201ENST00000620778 4980 ntBASIC20.34■□□□□ 0.85
VIMP08670 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VIMP08670 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.34■□□□□ 0.85
VIMP08670 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VIMP08670 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.33■□□□□ 0.85
VIMP08670 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VIMP08670 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VIMP08670 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
VIMP08670 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VIMP08670 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VIMP08670 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
VIMP08670 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VIMP08670 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
VIMP08670 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
VIMP08670 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VIMP08670 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VIMP08670 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.84
VIMP08670 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VIMP08670 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.33■□□□□ 0.84
VIMP08670 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
VIMP08670 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.84
VIMP08670 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
VIMP08670 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VIMP08670 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms