Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL2A1P02458 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
COL2A1P02458 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COL2A1P02458 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COL2A1P02458 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL2A1P02458 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
COL2A1P02458 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL2A1P02458 AC073912.3-201ENST00000624414 853 ntBASIC23.92■■□□□ 1.42
COL2A1P02458 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL2A1P02458 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
COL2A1P02458 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL2A1P02458 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL2A1P02458 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL2A1P02458 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC23.91■■□□□ 1.42
COL2A1P02458 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL2A1P02458 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL2A1P02458 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.91■■□□□ 1.42
COL2A1P02458 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.91■■□□□ 1.42
COL2A1P02458 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
COL2A1P02458 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
COL2A1P02458 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23.91■■□□□ 1.42
COL2A1P02458 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC23.91■■□□□ 1.42
COL2A1P02458 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.91■■□□□ 1.42
COL2A1P02458 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL2A1P02458 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL2A1P02458 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL2A1P02458 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.91■■□□□ 1.42
COL2A1P02458 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC23.91■■□□□ 1.42
COL2A1P02458 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
COL2A1P02458 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL2A1P02458 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC23.9■■□□□ 1.42
COL2A1P02458 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
COL2A1P02458 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.9■■□□□ 1.42
COL2A1P02458 DHDH-203ENST00000522614 776 ntTSL 5 BASIC23.9■■□□□ 1.42
COL2A1P02458 Six3os1_6.1-201ENST00000620790 196 ntBASIC23.9■■□□□ 1.42
COL2A1P02458 AL121906.2-201ENST00000621597 723 ntBASIC23.9■■□□□ 1.42
COL2A1P02458 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL2A1P02458 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL2A1P02458 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL2A1P02458 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL2A1P02458 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL2A1P02458 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC23.9■■□□□ 1.42
COL2A1P02458 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL2A1P02458 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL2A1P02458 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.42
COL2A1P02458 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.42
COL2A1P02458 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC23.89■■□□□ 1.42
COL2A1P02458 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC23.89■■□□□ 1.42
COL2A1P02458 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC23.89■■□□□ 1.42
COL2A1P02458 CABP2-204ENST00000636477 941 ntTSL 5 BASIC23.89■■□□□ 1.42
COL2A1P02458 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL2A1P02458 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL2A1P02458 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL2A1P02458 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL2A1P02458 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL2A1P02458 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
COL2A1P02458 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL2A1P02458 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.89■■□□□ 1.41
COL2A1P02458 FBXW4P1-201ENST00000426721 2239 ntBASIC23.89■■□□□ 1.41
COL2A1P02458 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.88■■□□□ 1.41
COL2A1P02458 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL2A1P02458 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL2A1P02458 PRKY-204ENST00000533551 1019 ntBASIC23.88■■□□□ 1.41
COL2A1P02458 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC23.88■■□□□ 1.41
COL2A1P02458 AC113410.3-201ENST00000623366 203 ntBASIC23.88■■□□□ 1.41
COL2A1P02458 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC23.88■■□□□ 1.41
COL2A1P02458 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.88■■□□□ 1.41
COL2A1P02458 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL2A1P02458 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL2A1P02458 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.88■■□□□ 1.41
COL2A1P02458 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL2A1P02458 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL2A1P02458 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL2A1P02458 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.88■■□□□ 1.41
COL2A1P02458 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.88■■□□□ 1.41
COL2A1P02458 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
COL2A1P02458 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL2A1P02458 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL2A1P02458 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.87■■□□□ 1.41
COL2A1P02458 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL2A1P02458 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL2A1P02458 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC23.87■■□□□ 1.41
COL2A1P02458 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
COL2A1P02458 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC23.87■■□□□ 1.41
COL2A1P02458 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.87■■□□□ 1.41
COL2A1P02458 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC23.87■■□□□ 1.41
COL2A1P02458 AP001412.1-201ENST00000608405 714 ntBASIC23.87■■□□□ 1.41
COL2A1P02458 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC23.87■■□□□ 1.41
COL2A1P02458 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL2A1P02458 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
COL2A1P02458 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.87■■□□□ 1.41
COL2A1P02458 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL2A1P02458 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL2A1P02458 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.87■■□□□ 1.41
COL2A1P02458 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL2A1P02458 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC23.87■■□□□ 1.41
COL2A1P02458 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC23.87■■□□□ 1.41
COL2A1P02458 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC23.87■■□□□ 1.41
COL2A1P02458 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.87■■□□□ 1.41
COL2A1P02458 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms