Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.01■□□□□ 0.31
ABCA1O95477 TSPY7P-201ENST00000431358 1114 ntBASIC17.01■□□□□ 0.31
ABCA1O95477 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 RN7SL850P-201ENST00000579959 291 ntBASIC17.01■□□□□ 0.31
ABCA1O95477 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
ABCA1O95477 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
ABCA1O95477 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.01■□□□□ 0.31
ABCA1O95477 AC092053.2-201ENST00000640557 1818 ntBASIC17.01■□□□□ 0.31
ABCA1O95477 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ABCA1O95477 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
ABCA1O95477 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 AC012306.2-201ENST00000609350 630 ntBASIC17■□□□□ 0.31
ABCA1O95477 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
ABCA1O95477 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17■□□□□ 0.31
ABCA1O95477 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17■□□□□ 0.31
ABCA1O95477 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17■□□□□ 0.31
ABCA1O95477 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
ABCA1O95477 AP001412.1-201ENST00000608405 714 ntBASIC17■□□□□ 0.31
ABCA1O95477 AC120498.8-201ENST00000614275 531 ntBASIC17■□□□□ 0.31
ABCA1O95477 AC105020.6-201ENST00000621523 1217 ntBASIC17■□□□□ 0.31
ABCA1O95477 AL023875.1-201ENST00000640777 796 ntBASIC17■□□□□ 0.31
ABCA1O95477 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ABCA1O95477 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.99■□□□□ 0.31
ABCA1O95477 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.99■□□□□ 0.31
ABCA1O95477 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
ABCA1O95477 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
ABCA1O95477 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC16.99■□□□□ 0.31
ABCA1O95477 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
ABCA1O95477 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.99■□□□□ 0.31
ABCA1O95477 RCN1P1-201ENST00000400413 996 ntBASIC16.99■□□□□ 0.31
ABCA1O95477 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
ABCA1O95477 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ABCA1O95477 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
ABCA1O95477 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.98■□□□□ 0.31
ABCA1O95477 CLDN5-201ENST00000403084 2357 ntBASIC16.98■□□□□ 0.31
ABCA1O95477 AC026310.3-201ENST00000625186 2373 ntBASIC16.98■□□□□ 0.31
ABCA1O95477 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.98■□□□□ 0.31
ABCA1O95477 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
ABCA1O95477 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.98■□□□□ 0.31
ABCA1O95477 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.98■□□□□ 0.31
ABCA1O95477 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.98■□□□□ 0.31
ABCA1O95477 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC16.98■□□□□ 0.31
ABCA1O95477 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.98■□□□□ 0.31
ABCA1O95477 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.98■□□□□ 0.31
ABCA1O95477 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
ABCA1O95477 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ABCA1O95477 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.98■□□□□ 0.31
ABCA1O95477 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.97■□□□□ 0.31
ABCA1O95477 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
ABCA1O95477 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
ABCA1O95477 RARRES2P10-201ENST00000564312 460 ntBASIC16.97■□□□□ 0.31
ABCA1O95477 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms