Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SGCEO43556 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.9■□□□□ 0.46
SGCEO43556 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 LINC01006-201ENST00000333319 2292 ntBASIC17.9■□□□□ 0.46
SGCEO43556 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
SGCEO43556 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SGCEO43556 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 AC007322.4-201ENST00000509611 723 ntBASIC17.9■□□□□ 0.46
SGCEO43556 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.9■□□□□ 0.46
SGCEO43556 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.9■□□□□ 0.46
SGCEO43556 AC022517.1-201ENST00000592429 346 ntBASIC17.9■□□□□ 0.46
SGCEO43556 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SGCEO43556 AC011767.1-201ENST00000617410 1153 ntBASIC17.9■□□□□ 0.46
SGCEO43556 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.9■□□□□ 0.46
SGCEO43556 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SGCEO43556 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SGCEO43556 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SGCEO43556 LINC01521-201ENST00000504184 1943 ntBASIC17.9■□□□□ 0.46
SGCEO43556 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
SGCEO43556 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SGCEO43556 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.89■□□□□ 0.45
SGCEO43556 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SGCEO43556 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 AC073314.1-201ENST00000568729 2216 ntBASIC17.89■□□□□ 0.45
SGCEO43556 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.89■□□□□ 0.45
SGCEO43556 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.89■□□□□ 0.45
SGCEO43556 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SGCEO43556 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SGCEO43556 AP005212.1-201ENST00000581547 1997 ntBASIC17.89■□□□□ 0.45
SGCEO43556 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
SGCEO43556 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.89■□□□□ 0.45
SGCEO43556 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.89■□□□□ 0.45
SGCEO43556 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SGCEO43556 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.88■□□□□ 0.45
SGCEO43556 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.88■□□□□ 0.45
SGCEO43556 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.88■□□□□ 0.45
SGCEO43556 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.88■□□□□ 0.45
SGCEO43556 DUX4L16-201ENST00000555130 1264 ntBASIC17.88■□□□□ 0.45
SGCEO43556 AL162412.1-201ENST00000567129 965 ntBASIC17.88■□□□□ 0.45
SGCEO43556 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.88■□□□□ 0.45
SGCEO43556 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.88■□□□□ 0.45
SGCEO43556 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 FAM21FP-204ENST00000608637 956 ntBASIC17.88■□□□□ 0.45
SGCEO43556 MIR2861-201ENST00000636310 90 ntBASIC17.88■□□□□ 0.45
SGCEO43556 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.88■□□□□ 0.45
SGCEO43556 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.88■□□□□ 0.45
SGCEO43556 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
SGCEO43556 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.88■□□□□ 0.45
SGCEO43556 GABARAPL3-202ENST00000624044 1851 ntBASIC17.88■□□□□ 0.45
SGCEO43556 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.88■□□□□ 0.45
SGCEO43556 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SGCEO43556 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
SGCEO43556 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SGCEO43556 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.87■□□□□ 0.45
SGCEO43556 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
SGCEO43556 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.87■□□□□ 0.45
SGCEO43556 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.87■□□□□ 0.45
SGCEO43556 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.87■□□□□ 0.45
SGCEO43556 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms