Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.23■□□□□ 0.35
SDCBPO00560 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
SDCBPO00560 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.23■□□□□ 0.35
SDCBPO00560 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SDCBPO00560 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.22■□□□□ 0.35
SDCBPO00560 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SDCBPO00560 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.22■□□□□ 0.35
SDCBPO00560 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.22■□□□□ 0.35
SDCBPO00560 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.22■□□□□ 0.35
SDCBPO00560 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDCBPO00560 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SDCBPO00560 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDCBPO00560 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDCBPO00560 AC008175.2-201ENST00000612840 297 ntBASIC17.22■□□□□ 0.35
SDCBPO00560 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SDCBPO00560 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDCBPO00560 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SDCBPO00560 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SDCBPO00560 AIRN-201ENST00000601203 4374 ntBASIC17.21■□□□□ 0.35
SDCBPO00560 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.21■□□□□ 0.35
SDCBPO00560 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.21■□□□□ 0.35
SDCBPO00560 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
SDCBPO00560 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 AP004607.4-201ENST00000530158 1459 ntBASIC17.21■□□□□ 0.35
SDCBPO00560 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.21■□□□□ 0.35
SDCBPO00560 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.21■□□□□ 0.35
SDCBPO00560 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.21■□□□□ 0.35
SDCBPO00560 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.21■□□□□ 0.35
SDCBPO00560 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SDCBPO00560 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SDCBPO00560 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SDCBPO00560 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
SDCBPO00560 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
SDCBPO00560 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.34
SDCBPO00560 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SDCBPO00560 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
SDCBPO00560 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.2■□□□□ 0.34
SDCBPO00560 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SDCBPO00560 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
SDCBPO00560 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SDCBPO00560 AC061975.6-201ENST00000579045 1553 ntBASIC17.2■□□□□ 0.34
SDCBPO00560 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.2■□□□□ 0.34
SDCBPO00560 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 AC123595.1-201ENST00000440769 1046 ntBASIC17.2■□□□□ 0.34
SDCBPO00560 YBX1P1-201ENST00000445822 960 ntBASIC17.2■□□□□ 0.34
SDCBPO00560 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.2■□□□□ 0.34
SDCBPO00560 SP2-202ENST00000613139 908 ntTSL 5 BASIC17.2■□□□□ 0.34
SDCBPO00560 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SDCBPO00560 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.2■□□□□ 0.34
SDCBPO00560 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.2■□□□□ 0.34
SDCBPO00560 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.2■□□□□ 0.34
SDCBPO00560 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDCBPO00560 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SDCBPO00560 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SDCBPO00560 ZNRF2P3-201ENST00000424200 374 ntBASIC17.19■□□□□ 0.34
SDCBPO00560 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.19■□□□□ 0.34
SDCBPO00560 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.19■□□□□ 0.34
SDCBPO00560 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms