Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
FOXN3O00409 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
FOXN3O00409 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
FOXN3O00409 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.79■■□□□ 1.08
FOXN3O00409 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
FOXN3O00409 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.79■■□□□ 1.08
FOXN3O00409 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.79■■□□□ 1.08
FOXN3O00409 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.79■■□□□ 1.08
FOXN3O00409 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.79■■□□□ 1.08
FOXN3O00409 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
FOXN3O00409 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
FOXN3O00409 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.79■■□□□ 1.08
FOXN3O00409 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
FOXN3O00409 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.79■■□□□ 1.08
FOXN3O00409 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
FOXN3O00409 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.79■■□□□ 1.08
FOXN3O00409 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
FOXN3O00409 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
FOXN3O00409 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 CYP21A1P-202ENST00000354927 1481 ntBASIC21.78■■□□□ 1.08
FOXN3O00409 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
FOXN3O00409 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.78■■□□□ 1.08
FOXN3O00409 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
FOXN3O00409 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 BID-214ENST00000617586 542 ntTSL 5 BASIC21.78■■□□□ 1.08
FOXN3O00409 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.78■■□□□ 1.08
FOXN3O00409 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXN3O00409 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
FOXN3O00409 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.77■■□□□ 1.08
FOXN3O00409 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
FOXN3O00409 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
FOXN3O00409 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.77■■□□□ 1.08
FOXN3O00409 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.77■■□□□ 1.08
FOXN3O00409 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
FOXN3O00409 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
FOXN3O00409 MIR935-201ENST00000401179 91 ntBASIC21.77■■□□□ 1.08
FOXN3O00409 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.77■■□□□ 1.08
FOXN3O00409 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
FOXN3O00409 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
FOXN3O00409 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
FOXN3O00409 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
FOXN3O00409 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
FOXN3O00409 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
FOXN3O00409 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
FOXN3O00409 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.77■■□□□ 1.07
FOXN3O00409 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
FOXN3O00409 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.76■■□□□ 1.07
FOXN3O00409 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXN3O00409 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXN3O00409 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXN3O00409 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXN3O00409 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
FOXN3O00409 RARRES2P4-201ENST00000514074 484 ntBASIC21.76■■□□□ 1.07
FOXN3O00409 AC087633.2-202ENST00000565166 1439 ntBASIC21.76■■□□□ 1.07
FOXN3O00409 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXN3O00409 AC092437.1-201ENST00000624794 1048 ntBASIC21.76■■□□□ 1.07
FOXN3O00409 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.76■■□□□ 1.07
FOXN3O00409 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
FOXN3O00409 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.76■■□□□ 1.07
FOXN3O00409 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.75■■□□□ 1.07
FOXN3O00409 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXN3O00409 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXN3O00409 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXN3O00409 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXN3O00409 AL356652.1-201ENST00000615962 565 ntBASIC21.75■■□□□ 1.07
FOXN3O00409 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
FOXN3O00409 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXN3O00409 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXN3O00409 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.74■■□□□ 1.07
FOXN3O00409 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXN3O00409 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXN3O00409 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.74■■□□□ 1.07
FOXN3O00409 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.74■■□□□ 1.07
FOXN3O00409 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
FOXN3O00409 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.74■■□□□ 1.07
FOXN3O00409 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.74■■□□□ 1.07
FOXN3O00409 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
FOXN3O00409 IKBKGP1-201ENST00000612193 1073 ntBASIC21.74■■□□□ 1.07
FOXN3O00409 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.74■■□□□ 1.07
FOXN3O00409 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
FOXN3O00409 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.74■■□□□ 1.07
FOXN3O00409 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXN3O00409 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.74■■□□□ 1.07
FOXN3O00409 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.74■■□□□ 1.07
FOXN3O00409 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXN3O00409 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.74■■□□□ 1.07
FOXN3O00409 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
FOXN3O00409 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
FOXN3O00409 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
FOXN3O00409 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
FOXN3O00409 DPP3P2-201ENST00000416030 1696 ntBASIC21.73■■□□□ 1.07
FOXN3O00409 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms