Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CHKB-CPT1BH3BT56 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
CHKB-CPT1BH3BT56 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
CHKB-CPT1BH3BT56 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.59
CHKB-CPT1BH3BT56 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 CHML-205ENST00000638160 705 ntTSL 3 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 AC104581.1-202ENST00000635932 2618 ntBASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC11.33□□□□□ -0.6
CHKB-CPT1BH3BT56 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 AP000974.1-201ENST00000623909 2387 ntBASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 CIB2-204ENST00000557846 934 ntTSL 3 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
CHKB-CPT1BH3BT56 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CHKB-CPT1BH3BT56 AC005559.1-201ENST00000589661 871 ntBASIC11.31□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms