Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 AC004408.2-201ENST00000623613 2777 ntBASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 AL691432.2-201ENST00000607222 2038 ntBASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 AC126544.1-201ENST00000580842 1059 ntBASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 AC093484.2-201ENST00000580996 2166 ntBASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV1-2A0A0B4J238 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 AC008175.2-201ENST00000612840 297 ntBASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 TREX1-205ENST00000625293 1783 ntBASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV1-2A0A0B4J238 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRAV1-2A0A0B4J238 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
TRAV1-2A0A0B4J238 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.64■□□□□ 0.42
TRAV1-2A0A0B4J238 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
TRAV1-2A0A0B4J238 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV1-2A0A0B4J238 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV1-2A0A0B4J238 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 BX119927.1-201ENST00000636596 1552 ntBASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 AC116050.2-201ENST00000612102 1779 ntBASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 AC245052.3-201ENST00000450182 901 ntBASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 MIR4767-201ENST00000582827 78 ntBASIC17.62■□□□□ 0.41
TRAV1-2A0A0B4J238 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms