Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
MMP28Q9H239 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.9■□□□□ 0.46
MMP28Q9H239 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
MMP28Q9H239 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.9■□□□□ 0.46
MMP28Q9H239 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.9■□□□□ 0.46
MMP28Q9H239 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.89■□□□□ 0.46
MMP28Q9H239 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.89■□□□□ 0.45
MMP28Q9H239 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
MMP28Q9H239 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
MMP28Q9H239 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 AL136162.1-201ENST00000607711 1078 ntBASIC17.89■□□□□ 0.45
MMP28Q9H239 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
MMP28Q9H239 AC135279.3-201ENST00000610945 1311 ntBASIC17.89■□□□□ 0.45
MMP28Q9H239 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MMP28Q9H239 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
MMP28Q9H239 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
MMP28Q9H239 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
MMP28Q9H239 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MMP28Q9H239 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
MMP28Q9H239 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.88■□□□□ 0.45
MMP28Q9H239 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MMP28Q9H239 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MMP28Q9H239 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MMP28Q9H239 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.88■□□□□ 0.45
MMP28Q9H239 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.88■□□□□ 0.45
MMP28Q9H239 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.88■□□□□ 0.45
MMP28Q9H239 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MMP28Q9H239 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.88■□□□□ 0.45
MMP28Q9H239 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.88■□□□□ 0.45
MMP28Q9H239 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.88■□□□□ 0.45
MMP28Q9H239 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.88■□□□□ 0.45
MMP28Q9H239 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.88■□□□□ 0.45
MMP28Q9H239 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.87■□□□□ 0.45
MMP28Q9H239 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.87■□□□□ 0.45
MMP28Q9H239 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 GUK1-205ENST00000366722 850 ntTSL 3 BASIC17.87■□□□□ 0.45
MMP28Q9H239 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MMP28Q9H239 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MMP28Q9H239 AC024257.2-201ENST00000549699 147 ntBASIC17.87■□□□□ 0.45
MMP28Q9H239 AC142381.2-201ENST00000566120 298 ntBASIC17.87■□□□□ 0.45
MMP28Q9H239 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
MMP28Q9H239 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MMP28Q9H239 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
MMP28Q9H239 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.87■□□□□ 0.45
MMP28Q9H239 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.87■□□□□ 0.45
MMP28Q9H239 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MMP28Q9H239 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 AC007613.1-201ENST00000572811 2597 ntBASIC17.86■□□□□ 0.45
MMP28Q9H239 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.86■□□□□ 0.45
MMP28Q9H239 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
MMP28Q9H239 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.86■□□□□ 0.45
MMP28Q9H239 MIR4767-201ENST00000582827 78 ntBASIC17.86■□□□□ 0.45
MMP28Q9H239 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
MMP28Q9H239 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.86■□□□□ 0.45
MMP28Q9H239 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
MMP28Q9H239 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.86■□□□□ 0.45
MMP28Q9H239 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.86■□□□□ 0.45
MMP28Q9H239 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MMP28Q9H239 AC125437.2-201ENST00000625180 2167 ntBASIC17.86■□□□□ 0.45
MMP28Q9H239 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms