Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 MFF-205ENST00000354503 1085 ntTSL 2 BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 PGM5P4-201ENST00000421970 445 ntBASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 SLC29A4P2-201ENST00000504749 1089 ntBASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 C2orf69P4-201ENST00000565394 541 ntBASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
TRAIPQ9BWF2 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
TRAIPQ9BWF2 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 AP006294.2-201ENST00000641667 209 ntBASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.29■■□□□ 1.16
TRAIPQ9BWF2 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 AC142381.4-202ENST00000563973 229 ntBASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAIPQ9BWF2 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 OR2A1-AS1-207ENST00000486094 819 ntBASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
TRAIPQ9BWF2 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 AC005229.4-201ENST00000610085 2198 ntBASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 REXO2-208ENST00000539754 791 ntTSL 2 BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC22.26■■□□□ 1.15
TRAIPQ9BWF2 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms