Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 AC005829.2-201ENST00000571422 1056 ntBASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 AP006294.2-201ENST00000641667 209 ntBASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 MIR2861-201ENST00000636310 90 ntBASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PAAF1Q9BRP4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 PLK5-205ENST00000642079 1969 ntBASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 AL596275.1-201ENST00000423464 877 ntBASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 KRT8P36-201ENST00000489121 1440 ntBASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.8■■□□□ 1.08
PAAF1Q9BRP4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 RPS2P4-201ENST00000476944 856 ntBASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms