Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 AC027702.1-201ENST00000563810 1770 ntBASIC22.15■■□□□ 1.14
LRCH3Q96II8 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 COPE-203ENST00000351079 907 ntTSL 2 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 SERP1-205ENST00000487153 657 ntTSL 4 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 GPALPP1-207ENST00000611650 899 ntBASIC22.15■■□□□ 1.14
LRCH3Q96II8 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.15■■□□□ 1.14
LRCH3Q96II8 AC079834.2-201ENST00000609776 1949 ntBASIC22.15■■□□□ 1.14
LRCH3Q96II8 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRCH3Q96II8 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.14■■□□□ 1.14
LRCH3Q96II8 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
LRCH3Q96II8 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
LRCH3Q96II8 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.14■■□□□ 1.14
LRCH3Q96II8 AK4P3-201ENST00000418260 669 ntBASIC22.14■■□□□ 1.13
LRCH3Q96II8 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.14■■□□□ 1.13
LRCH3Q96II8 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.14■■□□□ 1.13
LRCH3Q96II8 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRCH3Q96II8 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.14■■□□□ 1.13
LRCH3Q96II8 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRCH3Q96II8 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRCH3Q96II8 MED25-212ENST00000618715 1467 ntTSL 5 BASIC22.14■■□□□ 1.13
LRCH3Q96II8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRCH3Q96II8 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22.13■■□□□ 1.13
LRCH3Q96II8 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
LRCH3Q96II8 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC22.13■■□□□ 1.13
LRCH3Q96II8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.13■■□□□ 1.13
LRCH3Q96II8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC22.13■■□□□ 1.13
LRCH3Q96II8 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 LGALS8-AS1-201ENST00000487567 1457 ntBASIC22.13■■□□□ 1.13
LRCH3Q96II8 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRCH3Q96II8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
LRCH3Q96II8 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
LRCH3Q96II8 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRCH3Q96II8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRCH3Q96II8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC22.12■■□□□ 1.13
LRCH3Q96II8 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.12■■□□□ 1.13
LRCH3Q96II8 AC063952.2-201ENST00000498792 1227 ntBASIC22.12■■□□□ 1.13
LRCH3Q96II8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC22.12■■□□□ 1.13
LRCH3Q96II8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC22.12■■□□□ 1.13
LRCH3Q96II8 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRCH3Q96II8 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRCH3Q96II8 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.12■■□□□ 1.13
LRCH3Q96II8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
LRCH3Q96II8 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
LRCH3Q96II8 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
LRCH3Q96II8 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
LRCH3Q96II8 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
LRCH3Q96II8 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.11■■□□□ 1.13
LRCH3Q96II8 AL031133.1-201ENST00000406807 723 ntBASIC22.11■■□□□ 1.13
LRCH3Q96II8 KRT16P5-201ENST00000455284 522 ntBASIC22.11■■□□□ 1.13
LRCH3Q96II8 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC22.11■■□□□ 1.13
LRCH3Q96II8 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC22.11■■□□□ 1.13
LRCH3Q96II8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.11■■□□□ 1.13
LRCH3Q96II8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.11■■□□□ 1.13
LRCH3Q96II8 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
LRCH3Q96II8 AP000550.4-202ENST00000639755 178 ntBASIC22.11■■□□□ 1.13
LRCH3Q96II8 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LRCH3Q96II8 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LRCH3Q96II8 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.11■■□□□ 1.13
LRCH3Q96II8 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
LRCH3Q96II8 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC22.11■■□□□ 1.13
LRCH3Q96II8 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LRCH3Q96II8 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.1■■□□□ 1.13
LRCH3Q96II8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LRCH3Q96II8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LRCH3Q96II8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LRCH3Q96II8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
LRCH3Q96II8 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC22.1■■□□□ 1.13
LRCH3Q96II8 CLN6-204ENST00000564752 900 ntTSL 3 BASIC22.1■■□□□ 1.13
LRCH3Q96II8 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC22.1■■□□□ 1.13
LRCH3Q96II8 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC22.1■■□□□ 1.13
LRCH3Q96II8 MYC-208ENST00000641036 567 ntBASIC22.1■■□□□ 1.13
LRCH3Q96II8 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC22.1■■□□□ 1.13
LRCH3Q96II8 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
LRCH3Q96II8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LRCH3Q96II8 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC22.09■■□□□ 1.13
LRCH3Q96II8 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LRCH3Q96II8 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LRCH3Q96II8 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms