Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CHFRQ96EP1 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
CHFRQ96EP1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 AC211429.1-201ENST00000415277 523 ntBASIC20.82■□□□□ 0.92
CHFRQ96EP1 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.82■□□□□ 0.92
CHFRQ96EP1 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHFRQ96EP1 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
CHFRQ96EP1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHFRQ96EP1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.81■□□□□ 0.92
CHFRQ96EP1 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHFRQ96EP1 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.81■□□□□ 0.92
CHFRQ96EP1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHFRQ96EP1 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CHFRQ96EP1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
CHFRQ96EP1 AC239809.2-201ENST00000415381 517 ntBASIC20.81■□□□□ 0.92
CHFRQ96EP1 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHFRQ96EP1 TSPY15P-201ENST00000457163 923 ntBASIC20.81■□□□□ 0.92
CHFRQ96EP1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHFRQ96EP1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.81■□□□□ 0.92
CHFRQ96EP1 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHFRQ96EP1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.81■□□□□ 0.92
CHFRQ96EP1 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.81■□□□□ 0.92
CHFRQ96EP1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHFRQ96EP1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.8■□□□□ 0.92
CHFRQ96EP1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.8■□□□□ 0.92
CHFRQ96EP1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CHFRQ96EP1 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.8■□□□□ 0.92
CHFRQ96EP1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.8■□□□□ 0.92
CHFRQ96EP1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 REXO1L12P-201ENST00000622156 912 ntBASIC20.8■□□□□ 0.92
CHFRQ96EP1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHFRQ96EP1 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.8■□□□□ 0.92
CHFRQ96EP1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHFRQ96EP1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHFRQ96EP1 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHFRQ96EP1 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 KRASP1-201ENST00000407852 552 ntBASIC20.79■□□□□ 0.92
CHFRQ96EP1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHFRQ96EP1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHFRQ96EP1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHFRQ96EP1 AL049637.2-201ENST00000641778 930 ntBASIC20.79■□□□□ 0.92
CHFRQ96EP1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHFRQ96EP1 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.79■□□□□ 0.92
CHFRQ96EP1 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 BX088651.1-201ENST00000540551 451 ntBASIC20.78■□□□□ 0.92
CHFRQ96EP1 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 AC110285.5-201ENST00000611501 352 ntBASIC20.78■□□□□ 0.92
CHFRQ96EP1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHFRQ96EP1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CHFRQ96EP1 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms