Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC28AQ8IWP9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 AC074183.2-201ENST00000623112 922 ntBASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 AL356309.3-201ENST00000624132 1934 ntBASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC28AQ8IWP9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 MTX2-204ENST00000443241 799 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28AQ8IWP9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 AC005332.7-201ENST00000614046 2005 ntBASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC28AQ8IWP9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 AL390961.4-201ENST00000623958 2535 ntBASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 ATP5G2P3-201ENST00000429083 425 ntBASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 LONRF2P2-201ENST00000439212 571 ntBASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 AC022616.5-201ENST00000518796 181 ntBASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 AC011551.1-201ENST00000614101 683 ntBASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 AC012354.3-201ENST00000623734 483 ntBASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC28AQ8IWP9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28AQ8IWP9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms