Protein–RNA interactions for Protein: Q6P4E1

CASC4, Protein CASC4, humanhuman

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4Q6P4E1 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 AC112907.3-201ENST00000577781 2400 ntBASIC20.72■□□□□ 0.91
CASC4Q6P4E1 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 AC092720.2-201ENST00000602388 1665 ntBASIC20.72■□□□□ 0.91
CASC4Q6P4E1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CASC4Q6P4E1 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 KRT18P20-201ENST00000548986 1279 ntBASIC20.71■□□□□ 0.91
CASC4Q6P4E1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.71■□□□□ 0.91
CASC4Q6P4E1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CASC4Q6P4E1 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.69■□□□□ 0.9
CASC4Q6P4E1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.68■□□□□ 0.9
CASC4Q6P4E1 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CASC4Q6P4E1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CASC4Q6P4E1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CASC4Q6P4E1 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms