Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC25.14■■□□□ 1.62
CCDC88AQ3V6T2 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC25.14■■□□□ 1.61
CCDC88AQ3V6T2 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC25.14■■□□□ 1.61
CCDC88AQ3V6T2 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.61
CCDC88AQ3V6T2 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CCDC88AQ3V6T2 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 AC005829.2-201ENST00000571422 1056 ntBASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC88AQ3V6T2 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC88AQ3V6T2 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC88AQ3V6T2 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC25.12■■□□□ 1.61
CCDC88AQ3V6T2 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC25.12■■□□□ 1.61
CCDC88AQ3V6T2 REXO1L10P-201ENST00000615707 1290 ntBASIC25.12■■□□□ 1.61
CCDC88AQ3V6T2 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC88AQ3V6T2 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC25.12■■□□□ 1.61
CCDC88AQ3V6T2 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC88AQ3V6T2 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 AL390955.1-201ENST00000428694 934 ntBASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 AC145285.6-201ENST00000604632 637 ntBASIC25.11■■□□□ 1.61
CCDC88AQ3V6T2 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 MMP23A-201ENST00000234610 1017 ntBASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 AC116050.2-201ENST00000612102 1779 ntBASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC88AQ3V6T2 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 CRAT-202ENST00000393384 973 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 NME3-204ENST00000563498 920 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.09■■□□□ 1.61
CCDC88AQ3V6T2 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 SRI-203ENST00000419179 1307 ntTSL 2 BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 TPM1-226ENST00000560959 925 ntTSL 2 BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC88AQ3V6T2 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CCDC88AQ3V6T2 ME2-206ENST00000638410 2289 ntTSL 5 BASIC25.08■■□□□ 1.6
CCDC88AQ3V6T2 ME2-210ENST00000639255 2262 ntTSL 5 BASIC25.08■■□□□ 1.6
CCDC88AQ3V6T2 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CCDC88AQ3V6T2 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 AC006557.6-201ENST00000623071 864 ntBASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
CCDC88AQ3V6T2 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms