Protein–RNA interactions for Protein: P48764

SLC9A3, Sodium/hydrogen exchanger 3, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC9A3P48764 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.6■□□□□ 0.57
SLC9A3P48764 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.6■□□□□ 0.57
SLC9A3P48764 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.6■□□□□ 0.57
SLC9A3P48764 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SLC9A3P48764 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SLC9A3P48764 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.6■□□□□ 0.57
SLC9A3P48764 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SLC9A3P48764 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.6■□□□□ 0.57
SLC9A3P48764 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.59■□□□□ 0.57
SLC9A3P48764 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
SLC9A3P48764 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SLC9A3P48764 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.59■□□□□ 0.57
SLC9A3P48764 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 MIR638-201ENST00000385237 100 ntBASIC18.59■□□□□ 0.57
SLC9A3P48764 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.59■□□□□ 0.57
SLC9A3P48764 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.59■□□□□ 0.57
SLC9A3P48764 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.59■□□□□ 0.57
SLC9A3P48764 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SLC9A3P48764 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.59■□□□□ 0.57
SLC9A3P48764 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SLC9A3P48764 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SLC9A3P48764 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC9A3P48764 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.59■□□□□ 0.57
SLC9A3P48764 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
SLC9A3P48764 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC9A3P48764 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC9A3P48764 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
SLC9A3P48764 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SLC9A3P48764 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC9A3P48764 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
SLC9A3P48764 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC9A3P48764 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC9A3P48764 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC9A3P48764 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC9A3P48764 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC9A3P48764 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SLC9A3P48764 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SLC9A3P48764 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC9A3P48764 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC9A3P48764 KRT18P20-201ENST00000548986 1279 ntBASIC18.58■□□□□ 0.56
SLC9A3P48764 AC104187.1-201ENST00000607510 612 ntBASIC18.58■□□□□ 0.56
SLC9A3P48764 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.58■□□□□ 0.56
SLC9A3P48764 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SLC9A3P48764 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SLC9A3P48764 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SLC9A3P48764 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SLC9A3P48764 CCDC92B-201ENST00000575506 885 ntBASIC18.57■□□□□ 0.56
SLC9A3P48764 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.57■□□□□ 0.56
SLC9A3P48764 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC9A3P48764 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC9A3P48764 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SLC9A3P48764 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.56■□□□□ 0.56
SLC9A3P48764 AC116050.2-201ENST00000612102 1779 ntBASIC18.56■□□□□ 0.56
SLC9A3P48764 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.56■□□□□ 0.56
SLC9A3P48764 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.56■□□□□ 0.56
SLC9A3P48764 YBX1P1-201ENST00000445822 960 ntBASIC18.56■□□□□ 0.56
SLC9A3P48764 TERF1P2-201ENST00000583350 1212 ntBASIC18.56■□□□□ 0.56
SLC9A3P48764 AP001160.3-201ENST00000601484 763 ntBASIC18.56■□□□□ 0.56
SLC9A3P48764 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC9A3P48764 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC9A3P48764 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SLC9A3P48764 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
SLC9A3P48764 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.56■□□□□ 0.56
SLC9A3P48764 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms