Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.25■□□□□ 0.99
HMGA1P17096 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
HMGA1P17096 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGA1P17096 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HMGA1P17096 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.25■□□□□ 0.99
HMGA1P17096 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.25■□□□□ 0.99
HMGA1P17096 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGA1P17096 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGA1P17096 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
HMGA1P17096 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.24■□□□□ 0.99
HMGA1P17096 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.24■□□□□ 0.99
HMGA1P17096 UBE2SP1-201ENST00000450587 669 ntBASIC21.24■□□□□ 0.99
HMGA1P17096 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
HMGA1P17096 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.24■□□□□ 0.99
HMGA1P17096 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.24■□□□□ 0.99
HMGA1P17096 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.24■□□□□ 0.99
HMGA1P17096 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.24■□□□□ 0.99
HMGA1P17096 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.24■□□□□ 0.99
HMGA1P17096 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.24■□□□□ 0.99
HMGA1P17096 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
HMGA1P17096 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.24■□□□□ 0.99
HMGA1P17096 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
HMGA1P17096 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGA1P17096 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGA1P17096 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGA1P17096 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.23■□□□□ 0.99
HMGA1P17096 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGA1P17096 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGA1P17096 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HMGA1P17096 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.23■□□□□ 0.99
HMGA1P17096 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.23■□□□□ 0.99
HMGA1P17096 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
HMGA1P17096 LINC00565-201ENST00000562710 2331 ntBASIC21.23■□□□□ 0.99
HMGA1P17096 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGA1P17096 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HMGA1P17096 AF106564.1-201ENST00000607058 2553 ntBASIC21.23■□□□□ 0.99
HMGA1P17096 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.23■□□□□ 0.99
HMGA1P17096 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGA1P17096 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
HMGA1P17096 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.22■□□□□ 0.99
HMGA1P17096 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
HMGA1P17096 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGA1P17096 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGA1P17096 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.22■□□□□ 0.99
HMGA1P17096 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.22■□□□□ 0.99
HMGA1P17096 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HMGA1P17096 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HMGA1P17096 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.21■□□□□ 0.99
HMGA1P17096 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
HMGA1P17096 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
HMGA1P17096 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.21■□□□□ 0.99
HMGA1P17096 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.21■□□□□ 0.99
HMGA1P17096 RPS2P4-201ENST00000476944 856 ntBASIC21.21■□□□□ 0.99
HMGA1P17096 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.21■□□□□ 0.99
HMGA1P17096 AC008550.1-201ENST00000511500 884 ntBASIC21.21■□□□□ 0.99
HMGA1P17096 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.21■□□□□ 0.99
HMGA1P17096 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.21■□□□□ 0.99
HMGA1P17096 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.21■□□□□ 0.99
HMGA1P17096 MTDHP1-201ENST00000605323 784 ntBASIC21.21■□□□□ 0.99
HMGA1P17096 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.21■□□□□ 0.99
HMGA1P17096 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
HMGA1P17096 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.21■□□□□ 0.99
HMGA1P17096 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.21■□□□□ 0.99
HMGA1P17096 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.21■□□□□ 0.99
HMGA1P17096 PLK5-205ENST00000642079 1969 ntBASIC21.21■□□□□ 0.99
HMGA1P17096 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HMGA1P17096 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms