Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
VIMP08670 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 HCG11-201ENST00000411553 5696 ntBASIC20.42■□□□□ 0.86
VIMP08670 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VIMP08670 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VIMP08670 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.41■□□□□ 0.86
VIMP08670 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.41■□□□□ 0.86
VIMP08670 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.41■□□□□ 0.86
VIMP08670 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.41■□□□□ 0.86
VIMP08670 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.41■□□□□ 0.86
VIMP08670 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
VIMP08670 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
VIMP08670 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.41■□□□□ 0.86
VIMP08670 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VIMP08670 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.41■□□□□ 0.86
VIMP08670 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
VIMP08670 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.4■□□□□ 0.86
VIMP08670 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
VIMP08670 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VIMP08670 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.4■□□□□ 0.86
VIMP08670 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VIMP08670 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VIMP08670 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.39■□□□□ 0.86
VIMP08670 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 AC011484.1-201ENST00000377652 1995 ntBASIC20.39■□□□□ 0.86
VIMP08670 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
VIMP08670 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VIMP08670 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.39■□□□□ 0.85
VIMP08670 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
VIMP08670 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.39■□□□□ 0.85
VIMP08670 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.39■□□□□ 0.85
VIMP08670 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VIMP08670 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VIMP08670 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.39■□□□□ 0.85
VIMP08670 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.39■□□□□ 0.85
VIMP08670 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
VIMP08670 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VIMP08670 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.39■□□□□ 0.85
VIMP08670 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VIMP08670 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VIMP08670 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.39■□□□□ 0.85
VIMP08670 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VIMP08670 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VIMP08670 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VIMP08670 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VIMP08670 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
VIMP08670 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.38■□□□□ 0.85
VIMP08670 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VIMP08670 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VIMP08670 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VIMP08670 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VIMP08670 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.38■□□□□ 0.85
VIMP08670 BX005040.4-201ENST00000637145 1518 ntBASIC20.37■□□□□ 0.85
VIMP08670 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 AC005332.7-201ENST00000614046 2005 ntBASIC20.37■□□□□ 0.85
VIMP08670 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VIMP08670 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms