Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.11■□□□□ 0.33
CD74P04233 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.11■□□□□ 0.33
CD74P04233 EEF1DP3-203ENST00000566025 782 ntBASIC17.11■□□□□ 0.33
CD74P04233 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.11■□□□□ 0.33
CD74P04233 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.11■□□□□ 0.33
CD74P04233 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.11■□□□□ 0.33
CD74P04233 MIR2861-201ENST00000636310 90 ntBASIC17.11■□□□□ 0.33
CD74P04233 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.11■□□□□ 0.33
CD74P04233 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CD74P04233 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.11■□□□□ 0.33
CD74P04233 AC093484.2-201ENST00000580996 2166 ntBASIC17.11■□□□□ 0.33
CD74P04233 AC061975.6-201ENST00000579045 1553 ntBASIC17.11■□□□□ 0.33
CD74P04233 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.1■□□□□ 0.33
CD74P04233 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CD74P04233 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CD74P04233 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.1■□□□□ 0.33
CD74P04233 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC17.1■□□□□ 0.33
CD74P04233 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.1■□□□□ 0.33
CD74P04233 AC053503.5-201ENST00000601508 636 ntBASIC17.1■□□□□ 0.33
CD74P04233 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.1■□□□□ 0.33
CD74P04233 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.1■□□□□ 0.33
CD74P04233 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CD74P04233 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC17.09■□□□□ 0.33
CD74P04233 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC17.09■□□□□ 0.33
CD74P04233 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.09■□□□□ 0.33
CD74P04233 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 TREX1-205ENST00000625293 1783 ntBASIC17.09■□□□□ 0.33
CD74P04233 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.09■□□□□ 0.33
CD74P04233 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CD74P04233 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CD74P04233 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD74P04233 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CD74P04233 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.08■□□□□ 0.33
CD74P04233 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD74P04233 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD74P04233 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CD74P04233 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.08■□□□□ 0.32
CD74P04233 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.08■□□□□ 0.32
CD74P04233 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CD74P04233 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.08■□□□□ 0.32
CD74P04233 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.08■□□□□ 0.32
CD74P04233 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CD74P04233 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CD74P04233 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 AL691432.2-201ENST00000607222 2038 ntBASIC17.08■□□□□ 0.32
CD74P04233 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CD74P04233 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.07■□□□□ 0.32
CD74P04233 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.07■□□□□ 0.32
CD74P04233 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.07■□□□□ 0.32
CD74P04233 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.07■□□□□ 0.32
CD74P04233 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.07■□□□□ 0.32
CD74P04233 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CD74P04233 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CD74P04233 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD74P04233 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CD74P04233 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.06■□□□□ 0.32
CD74P04233 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms