Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.29■■□□□ 1.16
CHRNA1P02708 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CHRNA1P02708 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC22.28■■□□□ 1.16
CHRNA1P02708 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.28■■□□□ 1.16
CHRNA1P02708 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
CHRNA1P02708 KRASP1-201ENST00000407852 552 ntBASIC22.28■■□□□ 1.16
CHRNA1P02708 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.28■■□□□ 1.16
CHRNA1P02708 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.28■■□□□ 1.16
CHRNA1P02708 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
CHRNA1P02708 AC110285.5-201ENST00000611501 352 ntBASIC22.28■■□□□ 1.16
CHRNA1P02708 AC073912.3-201ENST00000624414 853 ntBASIC22.28■■□□□ 1.16
CHRNA1P02708 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CHRNA1P02708 AC133561.1-201ENST00000568600 2415 ntBASIC22.28■■□□□ 1.16
CHRNA1P02708 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC22.28■■□□□ 1.16
CHRNA1P02708 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CHRNA1P02708 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CHRNA1P02708 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHRNA1P02708 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC22.27■■□□□ 1.16
CHRNA1P02708 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.27■■□□□ 1.16
CHRNA1P02708 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHRNA1P02708 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CHRNA1P02708 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CHRNA1P02708 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.27■■□□□ 1.16
CHRNA1P02708 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC22.27■■□□□ 1.16
CHRNA1P02708 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC22.27■■□□□ 1.16
CHRNA1P02708 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC22.27■■□□□ 1.16
CHRNA1P02708 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC22.27■■□□□ 1.16
CHRNA1P02708 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CHRNA1P02708 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CHRNA1P02708 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CHRNA1P02708 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC22.26■■□□□ 1.15
CHRNA1P02708 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 TSPY7P-201ENST00000431358 1114 ntBASIC22.26■■□□□ 1.15
CHRNA1P02708 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.26■■□□□ 1.15
CHRNA1P02708 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC22.26■■□□□ 1.15
CHRNA1P02708 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.26■■□□□ 1.15
CHRNA1P02708 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
CHRNA1P02708 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC22.26■■□□□ 1.15
CHRNA1P02708 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CHRNA1P02708 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.26■■□□□ 1.15
CHRNA1P02708 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
CHRNA1P02708 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CHRNA1P02708 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.26■■□□□ 1.15
CHRNA1P02708 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
CHRNA1P02708 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
CHRNA1P02708 AC027702.1-201ENST00000563810 1770 ntBASIC22.25■■□□□ 1.15
CHRNA1P02708 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.25■■□□□ 1.15
CHRNA1P02708 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.25■■□□□ 1.15
CHRNA1P02708 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CHRNA1P02708 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 ECEL1P3-201ENST00000427961 737 ntBASIC22.25■■□□□ 1.15
CHRNA1P02708 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.25■■□□□ 1.15
CHRNA1P02708 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.25■■□□□ 1.15
CHRNA1P02708 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 REXO1L12P-201ENST00000622156 912 ntBASIC22.25■■□□□ 1.15
CHRNA1P02708 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.25■■□□□ 1.15
CHRNA1P02708 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC22.25■■□□□ 1.15
CHRNA1P02708 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.25■■□□□ 1.15
CHRNA1P02708 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.25■■□□□ 1.15
CHRNA1P02708 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CHRNA1P02708 Z98882.1-201ENST00000622160 2253 ntBASIC22.24■■□□□ 1.15
CHRNA1P02708 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.24■■□□□ 1.15
CHRNA1P02708 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHRNA1P02708 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CHRNA1P02708 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
CHRNA1P02708 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC22.24■■□□□ 1.15
CHRNA1P02708 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHRNA1P02708 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
CHRNA1P02708 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CHRNA1P02708 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
CHRNA1P02708 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHRNA1P02708 AL049637.2-201ENST00000641778 930 ntBASIC22.24■■□□□ 1.15
CHRNA1P02708 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CHRNA1P02708 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms