Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
TRAV1-2A0A0B4J238 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 MIR4466-201ENST00000606121 54 ntBASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 AC233992.3-201ENST00000607491 485 ntBASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TRAV1-2A0A0B4J238 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 POU5F1P4-201ENST00000413175 1085 ntBASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 RARRES2P11-201ENST00000635158 484 ntBASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV1-2A0A0B4J238 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 GUSBP5-201ENST00000418136 578 ntBASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 AC105233.4-201ENST00000642045 216 ntBASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TRAV1-2A0A0B4J238 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms