Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
CDK11AQ9UQ88 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC31.74■■■□□ 2.67
CDK11AQ9UQ88 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC31.74■■■□□ 2.67
CDK11AQ9UQ88 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
CDK11AQ9UQ88 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CDK11AQ9UQ88 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
CDK11AQ9UQ88 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CDK11AQ9UQ88 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
CDK11AQ9UQ88 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC31.73■■■□□ 2.67
CDK11AQ9UQ88 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 MIR1224-201ENST00000408193 85 ntBASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 PRKY-204ENST00000533551 1019 ntBASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC31.72■■■□□ 2.67
CDK11AQ9UQ88 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CDK11AQ9UQ88 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CDK11AQ9UQ88 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC31.7■■■□□ 2.67
CDK11AQ9UQ88 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC31.7■■■□□ 2.67
CDK11AQ9UQ88 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC31.7■■■□□ 2.67
CDK11AQ9UQ88 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC31.7■■■□□ 2.67
CDK11AQ9UQ88 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
CDK11AQ9UQ88 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC31.7■■■□□ 2.67
CDK11AQ9UQ88 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
CDK11AQ9UQ88 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CDK11AQ9UQ88 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC31.7■■■□□ 2.66
CDK11AQ9UQ88 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
CDK11AQ9UQ88 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC31.7■■■□□ 2.66
CDK11AQ9UQ88 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 SNX21-213ENST00000614929 587 ntTSL 5 BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC31.69■■■□□ 2.66
CDK11AQ9UQ88 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CDK11AQ9UQ88 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CDK11AQ9UQ88 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CDK11AQ9UQ88 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CDK11AQ9UQ88 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
CDK11AQ9UQ88 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC31.66■■■□□ 2.66
CDK11AQ9UQ88 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CDK11AQ9UQ88 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms