Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS4AQ9UN37 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 AC092667.1-201ENST00000434301 2586 ntBASIC19.67■□□□□ 0.74
VPS4AQ9UN37 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 KRT18P29-201ENST00000397031 1267 ntBASIC19.67■□□□□ 0.74
VPS4AQ9UN37 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS4AQ9UN37 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 GUSBP6-202ENST00000438529 1198 ntBASIC19.66■□□□□ 0.74
VPS4AQ9UN37 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS4AQ9UN37 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 DUX4L16-201ENST00000555130 1264 ntBASIC19.65■□□□□ 0.74
VPS4AQ9UN37 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 AC008687.6-201ENST00000596318 630 ntBASIC19.65■□□□□ 0.74
VPS4AQ9UN37 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
VPS4AQ9UN37 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS4AQ9UN37 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.64■□□□□ 0.74
VPS4AQ9UN37 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 AF201337.1-201ENST00000520239 748 ntBASIC19.64■□□□□ 0.73
VPS4AQ9UN37 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms