Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX3-1Q99801 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX3-1Q99801 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
NKX3-1Q99801 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX3-1Q99801 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NKX3-1Q99801 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX3-1Q99801 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX3-1Q99801 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
NKX3-1Q99801 MIR572-201ENST00000384983 95 ntBASIC17.75■□□□□ 0.43
NKX3-1Q99801 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.75■□□□□ 0.43
NKX3-1Q99801 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.75■□□□□ 0.43
NKX3-1Q99801 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.75■□□□□ 0.43
NKX3-1Q99801 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX3-1Q99801 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
NKX3-1Q99801 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX3-1Q99801 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX3-1Q99801 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX3-1Q99801 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX3-1Q99801 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 AC011484.1-201ENST00000377652 1995 ntBASIC17.74■□□□□ 0.43
NKX3-1Q99801 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 EEF1DP3-203ENST00000566025 782 ntBASIC17.74■□□□□ 0.43
NKX3-1Q99801 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 MIR6084-201ENST00000622012 110 ntBASIC17.74■□□□□ 0.43
NKX3-1Q99801 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX3-1Q99801 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.74■□□□□ 0.43
NKX3-1Q99801 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.73■□□□□ 0.43
NKX3-1Q99801 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NKX3-1Q99801 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.73■□□□□ 0.43
NKX3-1Q99801 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.73■□□□□ 0.43
NKX3-1Q99801 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.73■□□□□ 0.43
NKX3-1Q99801 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.73■□□□□ 0.43
NKX3-1Q99801 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
NKX3-1Q99801 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.73■□□□□ 0.43
NKX3-1Q99801 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.73■□□□□ 0.43
NKX3-1Q99801 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.72■□□□□ 0.43
NKX3-1Q99801 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NKX3-1Q99801 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX3-1Q99801 AP004607.4-201ENST00000530158 1459 ntBASIC17.71■□□□□ 0.43
NKX3-1Q99801 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX3-1Q99801 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
NKX3-1Q99801 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.71■□□□□ 0.43
NKX3-1Q99801 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC17.71■□□□□ 0.43
NKX3-1Q99801 AC053503.5-201ENST00000601508 636 ntBASIC17.71■□□□□ 0.43
NKX3-1Q99801 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.71■□□□□ 0.43
NKX3-1Q99801 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NKX3-1Q99801 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX3-1Q99801 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.71■□□□□ 0.43
NKX3-1Q99801 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NKX3-1Q99801 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX3-1Q99801 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NKX3-1Q99801 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms