Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LINC01124-201ENST00000409786 2117 ntBASIC21.63■■□□□ 1.05
CDX2Q99626 AC117947.1-201ENST00000427448 529 ntBASIC21.63■■□□□ 1.05
CDX2Q99626 AC091390.4-202ENST00000476426 537 ntBASIC21.63■■□□□ 1.05
CDX2Q99626 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDX2Q99626 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.63■■□□□ 1.05
CDX2Q99626 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CDX2Q99626 CLEC4GP1-201ENST00000596555 870 ntBASIC21.63■■□□□ 1.05
CDX2Q99626 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.63■■□□□ 1.05
CDX2Q99626 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.63■■□□□ 1.05
CDX2Q99626 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CDX2Q99626 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDX2Q99626 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.63■■□□□ 1.05
CDX2Q99626 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDX2Q99626 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDX2Q99626 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDX2Q99626 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CDX2Q99626 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDX2Q99626 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDX2Q99626 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDX2Q99626 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDX2Q99626 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.62■■□□□ 1.05
CDX2Q99626 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.62■■□□□ 1.05
CDX2Q99626 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDX2Q99626 C2orf69P3-201ENST00000565542 1120 ntBASIC21.62■■□□□ 1.05
CDX2Q99626 GPALPP1-207ENST00000611650 899 ntBASIC21.62■■□□□ 1.05
CDX2Q99626 AL691432.3-201ENST00000621860 400 ntBASIC21.62■■□□□ 1.05
CDX2Q99626 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDX2Q99626 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.62■■□□□ 1.05
CDX2Q99626 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDX2Q99626 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CDX2Q99626 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDX2Q99626 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDX2Q99626 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CDX2Q99626 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CDX2Q99626 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDX2Q99626 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CDX2Q99626 PCED1CP-201ENST00000419887 785 ntBASIC21.61■■□□□ 1.05
CDX2Q99626 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.61■■□□□ 1.05
CDX2Q99626 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.61■■□□□ 1.05
CDX2Q99626 AC004264.1-201ENST00000608354 794 ntBASIC21.61■■□□□ 1.05
CDX2Q99626 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDX2Q99626 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.61■■□□□ 1.05
CDX2Q99626 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDX2Q99626 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
CDX2Q99626 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.6■■□□□ 1.05
CDX2Q99626 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.6■■□□□ 1.05
CDX2Q99626 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.6■■□□□ 1.05
CDX2Q99626 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.6■■□□□ 1.05
CDX2Q99626 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.6■■□□□ 1.05
CDX2Q99626 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.6■■□□□ 1.05
CDX2Q99626 EGLN1P1-201ENST00000531623 762 ntBASIC21.6■■□□□ 1.05
CDX2Q99626 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.6■■□□□ 1.05
CDX2Q99626 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.6■■□□□ 1.05
CDX2Q99626 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDX2Q99626 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.59■■□□□ 1.05
CDX2Q99626 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.59■■□□□ 1.05
CDX2Q99626 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.59■■□□□ 1.05
CDX2Q99626 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
CDX2Q99626 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDX2Q99626 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.59■■□□□ 1.05
CDX2Q99626 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CDX2Q99626 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDX2Q99626 ANOS2P-203ENST00000472227 1816 ntBASIC21.59■■□□□ 1.05
CDX2Q99626 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDX2Q99626 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDX2Q99626 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
CDX2Q99626 AC116050.2-201ENST00000612102 1779 ntBASIC21.59■■□□□ 1.05
CDX2Q99626 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.58■■□□□ 1.05
CDX2Q99626 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
CDX2Q99626 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.58■■□□□ 1.05
CDX2Q99626 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDX2Q99626 HCG4P8-203ENST00000443049 980 ntBASIC21.58■■□□□ 1.05
CDX2Q99626 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.58■■□□□ 1.05
CDX2Q99626 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.58■■□□□ 1.05
CDX2Q99626 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.58■■□□□ 1.05
CDX2Q99626 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.58■■□□□ 1.05
CDX2Q99626 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.58■■□□□ 1.05
CDX2Q99626 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.58■■□□□ 1.05
CDX2Q99626 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.58■■□□□ 1.05
CDX2Q99626 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CDX2Q99626 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.58■■□□□ 1.04
CDX2Q99626 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms