Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 EDA-201ENST00000338901 1233 ntBASIC19.58■□□□□ 0.72
VPS33AQ96AX1 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 AC012414.1-201ENST00000556676 535 ntBASIC19.58■□□□□ 0.72
VPS33AQ96AX1 AF213884.3-201ENST00000563833 479 ntBASIC19.58■□□□□ 0.72
VPS33AQ96AX1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 AC092720.2-201ENST00000602388 1665 ntBASIC19.58■□□□□ 0.72
VPS33AQ96AX1 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS33AQ96AX1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 MIR939-201ENST00000401314 82 ntBASIC19.57■□□□□ 0.72
VPS33AQ96AX1 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS33AQ96AX1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 TPRG1LP1-201ENST00000598702 760 ntBASIC19.56■□□□□ 0.72
VPS33AQ96AX1 AC110285.6-201ENST00000617652 491 ntBASIC19.56■□□□□ 0.72
VPS33AQ96AX1 AL355001.2-201ENST00000620617 1191 ntBASIC19.56■□□□□ 0.72
VPS33AQ96AX1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS33AQ96AX1 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 AL031432.3-201ENST00000607698 485 ntBASIC19.55■□□□□ 0.72
VPS33AQ96AX1 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.55■□□□□ 0.72
VPS33AQ96AX1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS33AQ96AX1 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS33AQ96AX1 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms