Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SLC44A3Q8N4M1 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.03■□□□□ 0.96
SLC44A3Q8N4M1 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.03■□□□□ 0.96
SLC44A3Q8N4M1 AC012676.1-201ENST00000574705 1949 ntBASIC21.03■□□□□ 0.96
SLC44A3Q8N4M1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SLC44A3Q8N4M1 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SLC44A3Q8N4M1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SLC44A3Q8N4M1 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SLC44A3Q8N4M1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 AP003071.4-201ENST00000562276 1284 ntBASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SLC44A3Q8N4M1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 MMP23A-201ENST00000234610 1017 ntBASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 AL356652.1-201ENST00000615962 565 ntBASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SLC44A3Q8N4M1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 RN7SL850P-201ENST00000579959 291 ntBASIC21■□□□□ 0.95
SLC44A3Q8N4M1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21■□□□□ 0.95
SLC44A3Q8N4M1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 AL355355.2-201ENST00000442321 338 ntBASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 KRT18P35-201ENST00000510488 1269 ntBASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 AC133561.1-201ENST00000568600 2415 ntBASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.99■□□□□ 0.95
SLC44A3Q8N4M1 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms